| Pheatmap: pretty heatmaps R Kolde R package version 1 (2), 726, 2019 | 5374* | 2019 |
| Variation in microbiome LPS immunogenicity contributes to autoimmunity in humans T Vatanen, AD Kostic, E d’Hennezel, H Siljander, EA Franzosa, ... Cell 165 (4), 842-853, 2016 | 1406 | 2016 |
| Robust rank aggregation for gene list integration and meta-analysis R Kolde, S Laur, P Adler, J Vilo Bioinformatics 28 (4), 573-580, 2012 | 1057 | 2012 |
| Indoleacrylic acid produced by commensal peptostreptococcus species suppresses inflammation M Wlodarska, C Luo, R Kolde, E d’Hennezel, JW Annand, CE Heim, ... Cell host & microbe 22 (1), 25-37. e6, 2017 | 789 | 2017 |
| DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns K Lokk, V Modhukur, B Rajashekar, K Märtens, R Mägi, R Kolde, ... Genome biology 15, 1-14, 2014 | 443 | 2014 |
| Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach AK Krug, R Kolde, JA Gaspar, E Rempel, NV Balmer, K Meganathan, ... Archives of toxicology 87, 123-143, 2013 | 253 | 2013 |
| Meta‐analysis of microRNA expression in lung cancer U Vosa, T Vooder, R Kolde, J Vilo, A Metspalu, T Annilo International journal of cancer 132 (12), 2884-2893, 2013 | 250 | 2013 |
| Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life T Vatanen, DR Plichta, J Somani, PC Münch, TD Arthur, AB Hall, S Rudolf, ... Nature microbiology 4 (3), 470-479, 2019 | 226 | 2019 |
| Flow cytometric analysis of mononuclear phagocytes in nondiseased human lung and lung-draining lymph nodes AN Desch, SL Gibbings, R Goyal, R Kolde, J Bednarek, T Bruno, ... American journal of respiratory and critical care medicine 193 (6), 614-626, 2016 | 189 | 2016 |
| Host genetic variation and its microbiome interactions within the Human Microbiome Project R Kolde, EA Franzosa, G Rahnavard, AB Hall, H Vlamakis, C Stevens, ... Genome medicine 10, 1-13, 2018 | 180 | 2018 |
| Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods P Adler, R Kolde, M Kull, A Tkachenko, H Peterson, J Reimand, J Vilo Genome biology 10, 1-11, 2009 | 176 | 2009 |
| MicroRNA expression profiles of human blood monocyte-derived dendritic cells and macrophages reveal miR-511 as putative positive regulator of Toll-like receptor 4 L Tserel, T Runnel, K Kisand, M Pihlap, L Bakhoff, R Kolde, H Peterson, ... Journal of Biological Chemistry 286 (30), 26487-26495, 2011 | 170 | 2011 |
| Age-related profiling of DNA methylation in CD8+ T cells reveals changes in immune response and transcriptional regulator genes L Tserel, R Kolde, M Limbach, K Tretyakov, S Kasela, K Kisand, M Saare, ... Scientific reports 5 (1), 13107, 2015 | 161 | 2015 |
| Identification of miR‐374a as a prognostic marker for survival in patients with early‐stage nonsmall cell lung cancer U Võsa, T Vooder, R Kolde, K Fischer, K Välk, N Tõnisson, R Roosipuu, ... Genes, Chromosomes and Cancer 50 (10), 812-822, 2011 | 158 | 2011 |
| Gene expression profiles of non-small cell lung cancer: survival prediction and new biomarkers K Välk, T Vooder, R Kolde, MA Reintam, C Petzold, J Vilo, A Metspalu Oncology 79 (3-4), 283-292, 2011 | 130 | 2011 |
| Design principles of concentration-dependent transcriptome deviations in drug-exposed differentiating stem cells T Waldmann, E Rempel, NV Balmer, A König, R Kolde, JA Gaspar, ... Chemical research in toxicology 27 (3), 408-420, 2014 | 114 | 2014 |
| The effectiveness of COVID-19 vaccines to prevent long COVID symptoms: staggered cohort study of data from the UK, Spain, and Estonia M Català, N Mercadé-Besora, R Kolde, NTH Trinh, E Roel, E Burn, ... The Lancet Respiratory Medicine 12 (3), 225-236, 2024 | 96 | 2024 |
| Population structure discovery in meta-analyzed microbial communities and inflammatory bowel disease using MMUPHin S Ma, D Shungin, H Mallick, M Schirmer, LH Nguyen, R Kolde, ... Genome Biology 23 (1), 208, 2022 | 87 | 2022 |
| From transient transcriptome responses to disturbed neurodevelopment: role of histone acetylation and methylation as epigenetic switch between reversible and irreversible drug … NV Balmer, S Klima, E Rempel, VN Ivanova, R Kolde, MK Weng, ... Archives of toxicology 88, 1451-1468, 2014 | 81 | 2014 |
| Characterization of the phosphoinositide 3-kinase-dependent transcriptome in murine embryonic stem cells: identification of novel regulators of pluripotency MP Storm, B Kumpfmueller, B Thompson, R Kolde, J Vilo, O Hummel, ... Stem cells 27 (4), 764-775, 2009 | 81 | 2009 |
Jaak ViloProf. of Bioinformatics, Institute of Computer Science, University of Tartu, EstoniaVerified email at ut.ee