| Endogenous viral elements in animal genomes A Katzourakis, RJ Gifford PLoS genetics 6 (11), e1001191, 2010 | 722 | 2010 |
| The evolution, distribution and diversity of endogenous retroviruses R Gifford, M Tristem Virus genes 26, 291-315, 2003 | 477 | 2003 |
| SARS-CoV-2 ORF3b is a potent interferon antagonist whose activity is increased by a naturally occurring elongation variant Y Konno, I Kimura, K Uriu, M Fukushi, T Irie, Y Koyanagi, D Sauter, ... Cell reports 32 (12), 2020 | 473 | 2020 |
| Late Ebola virus relapse causing meningoencephalitis: a case report M Jacobs, A Rodger, DJ Bell, S Bhagani, I Cropley, A Filipe, RJ Gifford, ... The Lancet 388 (10043), 498-503, 2016 | 383 | 2016 |
| Fundamental properties of the mammalian innate immune system revealed by multispecies comparison of type I interferon responses AE Shaw, J Hughes, Q Gu, A Behdenna, JB Singer, T Dennis, RJ Orton, ... PLoS biology 15 (12), e2004086, 2017 | 328 | 2017 |
| Discovery and analysis of the first endogenous lentivirus A Katzourakis, M Tristem, OG Pybus, RJ Gifford Proceedings of the National Academy of Sciences 104 (15), 6261-6265, 2007 | 281 | 2007 |
| A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution RJ Gifford, A Katzourakis, M Tristem, OG Pybus, M Winters, RW Shafer Proceedings of the National Academy of Sciences 105 (51), 20362-20367, 2008 | 241 | 2008 |
| Extreme genetic fragility of the HIV-1 capsid SJ Rihn, SJ Wilson, NJ Loman, M Alim, SE Bakker, D Bhella, RJ Gifford, ... PLoS pathogens 9 (6), e1003461, 2013 | 240 | 2013 |
| The calibrated population resistance tool: standardized genotypic estimation of transmitted HIV-1 drug resistance RJ Gifford, TF Liu, SY Rhee, M Kiuchi, S Hue, D Pillay, RW Shafer Bioinformatics 25 (9), 1197-1198, 2009 | 225 | 2009 |
| Macroevolution of complex retroviruses A Katzourakis, RJ Gifford, M Tristem, MTP Gilbert, OG Pybus Science 325 (5947), 1512-1512, 2009 | 187 | 2009 |
| CoV-GLUE: a web application for tracking SARS-CoV-2 genomic variation J Singer, R Gifford, M Cotten, D Robertson MDPI AG, 2020 | 182 | 2020 |
| Viral evolution in deep time: lentiviruses and mammals RJ Gifford Trends in Genetics 28 (2), 89-100, 2012 | 158 | 2012 |
| Env-less endogenous retroviruses are genomic superspreaders G Magiorkinis, RJ Gifford, A Katzourakis, J De Ranter, R Belshaw Proceedings of the National Academy of Sciences 109 (19), 7385-7390, 2012 | 157 | 2012 |
| Nomenclature for endogenous retrovirus (ERV) loci RJ Gifford, J Blomberg, JM Coffin, H Fan, T Heidmann, J Mayer, J Stoye, ... Retrovirology 15, 1-11, 2018 | 139 | 2018 |
| Natural variation of HIV-1 group M integrase: implications for a new class of antiretroviral inhibitors SY Rhee, TF Liu, M Kiuchi, R Zioni, RJ Gifford, SP Holmes, RW Shafer Retrovirology 5, 1-11, 2008 | 130 | 2008 |
| Filovirus receptor NPC1 contributes to species-specific patterns of ebolavirus susceptibility in bats M Ng, E Ndungo, ME Kaczmarek, AS Herbert, T Binger, AI Kuehne, ... elife 4, e11785, 2015 | 127 | 2015 |
| The impact of transmitted drug resistance on the natural history of HIV infection and response to first-line therapy CASCADE Virology Collaboration Aids 20 (1), 21-28, 2006 | 124 | 2006 |
| Ortervirales: new virus order unifying five families of reverse-transcribing viruses M Krupovic, J Blomberg, JM Coffin, I Dasgupta, H Fan, AD Geering, ... Journal of virology 92 (12), 10.1128/jvi. 00515-18, 2018 | 117 | 2018 |
| Demonstration of sustained drug-resistant human immunodeficiency virus type 1 lineages circulating among treatment-naive individuals S Hué, RJ Gifford, D Dunn, E Fernhill, D Pillay Journal of virology 83 (6), 2645-2654, 2009 | 117 | 2009 |
| Prevalence of transmitted HIV-1 drug resistance and the role of resistance algorithms: data from seroconverters in the CASCADE collaboration from 1987 to 2003 B Masquelier, K Bhaskaran, D Pillay, R Gifford, E Balestre, LB Jørgensen, ... JAIDS Journal of Acquired Immune Deficiency Syndromes 40 (5), 505-511, 2005 | 113 | 2005 |