bin xue

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Vladimir UverskyProfessor, USFVerified email at usf.edu
A. Keith DunkerProfessor of Biochemistry,Indiana University School of MedicineVerified email at iupui.edu
Christopher J OldfieldVirginia Commonwealth UniversityVerified email at vcu.edu
Pedro RomeroAssociate Scientist, University of Wisconsin MadisonVerified email at wisc.edu
Yaoqi ZhouSenior Principal Investigator, Institute of Systems & Physical Biology, Shenzhen Bay LaboratoryVerified email at szbl.ac.cn
Eshel FaraggiAdjunct Professor, Physics, IUPUI; President, Research and Information Systems; Consultant, BattelleVerified email at iupui.edu
Zoran ObradovicData Analytics and Biomedical Informatics Center, Temple UniversityVerified email at temple.edu
Roland DunbrackFox Chase Cancer CenterVerified email at fccc.edu
Xiaolin SunSenoir Scientist, The New Zealand Institute of Plant and Food ResearchVerified email at plantandfood.co.nz
VRUSHANK DAVE, PhD (Biotech), MS...Director, Biotechnology Graduate Program, University of South Florida Morsani College of MedicineVerified email at usf.edu
Matt E OatesDescrybeVerified email at bristol.ac.uk
Takashi IshidaDepartment of Computer Science, School of Computing, TokyoVerified email at cs.titech.ac.jp
MONIKA FUXREITERprofessor, University of PadovaVerified email at unipd.it
Erik RikkerinkPrincipal Scientist, Plant Pathogen Environment Group, Plant and Food Research (Plant & FoodVerified email at plantandfood.co.nz
Prerna MalaneyAssistant Professor, Dartmouth CollegeVerified email at dartmouth.edu
Celeste J BrownUniversity of IdahoVerified email at uidaho.edu
Predrag RadivojacProfessor of Computer Science, Northeastern UniversityVerified email at northeastern.edu
Peter TompaPofessor of biochemistry, VIB SBRC, BrusselsVerified email at vub.ac.be
Eugene PermyakovInstitute for Biological Instrumentation of the Russian Academy of Sciences, chief scientistVerified email at ibp-ran.ru
Leonid BreydoStaff Scientist, RegeneronVerified email at regeneron.com

bin xue

University of South Florida

Verified email at usf.edu

machine learning data analysis and data mining algorithm/model/software development bioinformatics protein and ncRNA


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PONDR-FIT: a meta-predictor of intrinsically disordered amino acids B Xue, RL Dunbrack, RW Williams, AK Dunker, VN Uversky Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1804 (4), 996-1010, 2010	1329	2010
D²P²: database of disordered protein predictions ME Oates, P Romero, T Ishida, M Ghalwash, MJ Mizianty, B Xue, ... Nucleic acids research 41 (D1), D508-D516, 2012	728	2012
Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life B Xue, AK Dunker, VN Uversky Journal of Biomolecular Structure and Dynamics 30 (2), 137-149, 2012	607	2012
Predicting intrinsic disorder in proteins: an overview B He, K Wang, Y Liu, B Xue, VN Uversky, AK Dunker Cell research 19 (8), 929, 2009	527	2009
Exceptionally abundant exceptions: comprehensive characterization of intrinsic disorder in all domains of life Z Peng, J Yan, X Fan, MJ Mizianty, B Xue, K Wang, G Hu, VN Uversky, ... Cellular and Molecular Life Sciences 72 (1), 137-151, 2015	400	2015
MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins FM Disfani, WL Hsu, MJ Mizianty, CJ Oldfield, B Xue, AK Dunker, ... Bioinformatics 28 (12), i75-i83, 2012	374	2012
Unfoldomics of human diseases: linking protein intrinsic disorder with diseases VN Uversky, CJ Oldfield, U Midic, H Xie, B Xue, S Vucetic, LM Iakoucheva, ... BMC genomics 10 (Suppl 1), S7, 2009	333	2009
Exploring the binding diversity of intrinsically disordered proteins involved in one‐to‐many binding WL Hsu, CJ Oldfield, B Xue, J Meng, F Huang, P Romero, VN Uversky, ... Protein Science 22 (3), 258-273, 2013	225	2013
Structural disorder in viral proteins B Xue, D Blocquel, J Habchi, AV Uversky, L Kurgan, VN Uversky, ... Chemical reviews 114 (13), 6880-6911, 2014	214	2014
SPINE-D: Accurate prediction of short and long disordered regions by a single neural-network based method T Zhang, E Faraggi, B Xue, AK Dunker, VN Uversky, Y Zhou Journal of Biomolecular Structure and Dynamics 29 (4), 799-813, 2012	190	2012
Protein tandem repeats–the more perfect, the less structured J Jorda, B Xue, VN Uversky, AV Kajava FEBS journal 277 (12), 2673-2682, 2010	172	2010
A functionally required unfoldome from the plant kingdom: intrinsically disordered N-terminal domains of GRAS proteins are involved in molecular recognition during plant … X Sun, B Xue, WT Jones, E Rikkerink, AK Dunker, VN Uversky Plant molecular biology 77 (3), 205-223, 2011	156	2011
A creature with a hundred waggly tails: intrinsically disordered proteins in the ribosome Z Peng, CJ Oldfield, B Xue, MJ Mizianty, AK Dunker, L Kurgan, ... Cellular and Molecular Life Sciences 71 (8), 1477-1504, 2014	152	2014
CDF it all: consensus prediction of intrinsically disordered proteins based on various cumulative distribution functions B Xue, CJ Oldfield, AK Dunker, VN Uversky FEBS letters 583 (9), 1469-1474, 2009	150	2009
Improving the prediction accuracy of residue solvent accessibility and real‐value backbone torsion angles of proteins by guided‐learning through a two‐layer neural network E Faraggi, B Xue, Y Zhou Proteins: Structure, Function, and Bioinformatics 74 (4), 847-856, 2009	146	2009
Archaic chaos: intrinsically disordered proteins in Archaea B Xue, RW Williams, CJ Oldfield, AK Dunker, VN Uversky BMC systems biology 4 (Suppl 1), S1, 2010	142	2010
Do Viral Proteins Possess Unique Features? B Xue, RW Williams, CJ OLDfiELD, GKM Goh, AK DUNkER, ... Flexible Viruses: Structural Disorder in Viral Proteins, 1-34, 2012	138*	2012
Viral disorder or disordered viruses: do viral proteins possess unique features? B Xue, R W Williams, C J Oldfield, G Kian-Meng Goh, A Keith Dunker, ... Protein and peptide letters 17 (8), 932-951, 2010	131	2010
Disordered proteinaceous machines M Fuxreiter, A Tóth-Petróczy, DA Kraut, AT Matouschek, RYH Lim, B Xue, ... Chemical reviews 114 (13), 6806-6843, 2014	129	2014
More than just tails: intrinsic disorder in histone proteins Z Peng, MJ Mizianty, B Xue, L Kurgan, VN Uversky Molecular BioSystems 8 (7), 1886-1901, 2012	126	2012

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