Articles with public access mandates - Carlo PiermarocchiLearn more
Available somewhere: 27
Visibility graph based temporal community detection with applications in biological time series
M Zheng, S Domanskyi, C Piermarocchi, GI Mias
Scientific reports 11 (1), 5623, 2021
Mandates: US National Institutes of Health, US National Aeronautics and Space …
High-throughput screening and bioinformatic analysis to ascertain compounds that prevent saturated fatty acid-induced β-cell apoptosis
SH Lee, D Cunha, C Piermarocchi, G Paternostro, A Pinkerton, L Ladriere, ...
Biochemical pharmacology 138, 140-149, 2017
Mandates: US National Institutes of Health, European Commission
Polled Digital Cell Sorter (p-DCS): Automatic identification of hematological cell types from single cell RNA-sequencing clusters
S Domanskyi, A Szedlak, NT Hawkins, J Wang, G Paternostro, ...
BMC bioinformatics 20, 1-16, 2019
Mandates: US National Institutes of Health
Control of asymmetric Hopfield networks and application to cancer attractors
A Szedlak, G Paternostro, C Piermarocchi
PloS one 9 (8), e105842, 2014
Mandates: US National Institutes of Health
Identification of drug combinations containing imatinib for treatment of BCR-ABL+ leukemias
Y Kang, A Hodges, E Ong, W Roberts, C Piermarocchi, G Paternostro
PloS one 9 (7), e102221, 2014
Mandates: US National Institutes of Health
Statistical properties and robustness of biological controller-target networks
JD Feala, J Cortes, PM Duxbury, AD McCulloch, C Piermarocchi, ...
PLoS One 7 (1), e29374, 2012
Mandates: US National Institutes of Health
Longitudinal saliva omics responses to immune perturbation: a case study
GI Mias, VV Singh, LRK Rogers, S Xue, M Zheng, S Domanskyi, ...
Scientific Reports 11 (1), 710, 2021
Mandates: US National Institutes of Health, US National Aeronautics and Space …
Cell cycle time series gene expression data encoded as cyclic attractors in Hopfield systems
A Szedlak, S Sims, N Smith, G Paternostro, C Piermarocchi
PLoS computational biology 13 (11), e1005849, 2017
Mandates: US National Institutes of Health
LIF, a mitogen for choroidal endothelial cells, protects the choriocapillaris: implications for prevention of geographic atrophy
P Li, Q Li, N Biswas, H Xin, T Diemer, L Liu, L Perez Gutierrez, ...
EMBO molecular medicine 14 (1), e14511, 2022
Mandates: US National Institutes of Health, Champalimaud Foundation
PyIOmica: longitudinal omics analysis and trend identification
S Domanskyi, C Piermarocchi, GI Mias
Bioinformatics 36 (7), 2306-2307, 2020
Mandates: US National Institutes of Health, US National Aeronautics and Space …
Digital Cell Sorter (DCS): a cell type identification, anomaly detection, and Hopfield landscapes toolkit for single-cell transcriptomics
S Domanskyi, A Hakansson, TJ Bertus, G Paternostro, C Piermarocchi
PeerJ 9, e10670, 2021
Mandates: US National Institutes of Health
Collective rabi dynamics of electromagnetically coupled quantum-dot ensembles
C Glosser, B Shanker, C Piermarocchi
Physical Review A 96 (3), 033816, 2017
Mandates: US National Science Foundation
Evolutionary and topological properties of genes and community structures in human gene regulatory networks
A Szedlak, N Smith, L Liu, G Paternostro, C Piermarocchi
PLoS computational biology 12 (6), e1005009, 2016
Mandates: US National Science Foundation, US National Institutes of Health
Time-resolved molecular measurements reveal changes in astronauts during spaceflight
M Zheng, J Charvat, SR Zwart, SK Mehta, BE Crucian, SM Smith, J He, ...
Frontiers in Physiology 14, 1219221, 2023
Mandates: US National Institutes of Health, US National Aeronautics and Space …
Acceleration techniques for semiclassical Maxwell–Bloch systems: An application to discrete quantum dot ensembles
C Glosser, E Lu, TJ Bertus, C Piermarocchi, B Shanker
Computer Physics Communications 258, 107500, 2021
Mandates: US National Science Foundation
A scalable method for molecular network reconstruction identifies properties of targets and mutations in acute myeloid leukemia
E Ong, A Szedlak, Y Kang, P Smith, N Smith, M McBride, D Finlay, K Vuori, ...
Journal of Computational Biology 22 (4), 266-288, 2015
Mandates: US National Institutes of Health
Temporal response characterization across individual multiomics profiles of prediabetic and diabetic subjects
M Zheng, C Piermarocchi, GI Mias
Scientific Reports 12 (1), 12098, 2022
Mandates: US National Institutes of Health, US National Aeronautics and Space …
Combinations of kinase inhibitors protecting myoblasts against hypoxia
Y Kang, M Tierney, E Ong, L Zhang, C Piermarocchi, A Sacco, ...
Plos one 10 (6), e0126718, 2015
Mandates: US National Institutes of Health
Naturally occurring combinations of receptors from single cell transcriptomics in endothelial cells
S Domanskyi, A Hakansson, M Meng, BK Pham, JS Graff Zivin, ...
Scientific reports 12 (1), 5807, 2022
Mandates: US National Institutes of Health
Computational dynamics of acoustically driven microsphere systems
C Glosser, C Piermarocchi, J Li, D Dault, B Shanker
Physical Review E 93 (1), 013305, 2016
Mandates: US National Science Foundation
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