| Integrated genome and transcriptome sequencing of the same cell SS Dey, L Kester, B Spanjaard, M Bienko, A van Oudenaarden Nature Biotechnology 33, 285-289, 2015 | 560 | 2015 |
| Genome-wide maps of nuclear lamina interactions in single human cells J Kind, L Pagie, SS de Vries, L Nahidiazar, SS Dey, M Bienko, Y Zhan, ... Cell 163 (1), 134-147, 2015 | 511 | 2015 |
| Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction D Mooijman, SS Dey, JC Boisset, N Crosetto, A Van Oudenaarden Nature biotechnology 34 (8), 852-856, 2016 | 167 | 2016 |
| Orthogonal control of expression mean and variance by epigenetic features at different genomic loci SS Dey, JE Foley, P Limsirichai, DV Schaffer, AP Arkin Molecular systems biology 11 (5), 806, 2015 | 119 | 2015 |
| Simultaneous quantification of protein–DNA contacts and transcriptomes in single cells K Rooijers, CM Markodimitraki, FJ Rang, SS de Vries, A Chialastri, ... Nature biotechnology 37, 766–772, 2019 | 115 | 2019 |
| Varying virulence: epigenetic control of expression noise and disease processes K Miller-Jensen, SS Dey, DV Schaffer, AP Arkin Trends in biotechnology 29 (10), 517-525, 2011 | 72 | 2011 |
| An extended culture system that supports human primordial germ cell-like cell survival and initiation of DNA methylation erasure JJ Gell, W Liu, E Sosa, A Chialastri, G Hancock, Y Tao, SE Wamaitha, ... Stem Cell Reports 14 (3), 433-446, 2020 | 42 | 2020 |
| Chromatin accessibility at the HIV LTR promoter sets a threshold for NF-κB mediated viral gene expression K Miller-Jensen, SS Dey, N Pham, JE Foley, AP Arkin, DV Schaffer Integrative Biology 4 (6), 661-671, 2012 | 37 | 2012 |
| Efficient and cost-effective bacterial mRNA sequencing from low input samples through ribosomal RNA depletion C Wangsanuwat, KA Heom, E Liu, MA O’Malley, SS Dey BMC genomics 21, 1-12, 2020 | 30 | 2020 |
| Simultaneous quantification of protein–DNA interactions and transcriptomes in single cells with scDam&T-seq CM Markodimitraki, FJ Rang, K Rooijers, SS de Vries, A Chialastri, ... Nature protocols 15 (6), 1922-1953, 2020 | 29 | 2020 |
| Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics during early mammalian development M Sen, D Mooijman, A Chialastri, JC Boisset, M Popovic, B Heindryckx, ... Nature Communications 12 (1), 1286, 2021 | 25 | 2021 |
| Control over single-cell distribution of G1 lengths by WNT governs pluripotency J Jang, D Han, M Golkaram, M Audouard, G Liu, D Bridges, S Hellander, ... Plos Biology 17 (9), e3000453, 2019 | 18 | 2019 |
| Quantitative evaluation and optimization of co-drugging to improve anti-HIV latency therapy VC Wong, LE Fong, NM Adams, Q Xue, SS Dey, K Miller-Jensen Cellular and molecular bioengineering 7, 320-333, 2014 | 13 | 2014 |
| Optogenetic control of the integrated stress response reveals proportional encoding and the stress memory landscape T Batjargal, F Zappa, RJ Grant, RA Piscopio, A Chialastri, SS Dey, ... Cell Systems 14 (7), 551-562. e5, 2023 | 12 | 2023 |
| Mutual information analysis reveals coevolving residues in Tat that compensate for two distinct functions in HIV-1 gene expression SS Dey, Y Xue, MP Joachimiak, GD Friedland, JC Burnett, Q Zhou, ... Journal of Biological Chemistry 287 (11), 7945-7955, 2012 | 12 | 2012 |
| A probabilistic framework for cellular lineage reconstruction using integrated single-cell 5-hydroxymethylcytosine and genomic DNA sequencing C Wangsanuwat, A Chialastri, JF Aldeguer, NC Rivron, SS Dey Cell reports methods 1 (4), 2021 | 9 | 2021 |
| Opportunities for chemical engineering thermodynamics in biotechnology: some examples SS Dey, JM Prausnitz Industrial & Engineering Chemistry Research 50 (1), 3-15, 2011 | 6 | 2011 |
| Prior Fc receptor activation primes macrophages for increased sensitivity to IgG via long-term and short-term mechanisms A Bond, S Fiaz, K Rollins, JEQ Nario, ET Snyder, DJ Atkins, SJ Rosen, ... Developmental Cell 59 (21), 2882-2896. e7, 2024 | 5 | 2024 |
| (1S*, 2S*, 4S*, 5S*)-Cyclohexane-1, 2, 4, 5-tetrol monohydrate G Mehta, S Sen, S Dey Crystal Structure Communications 61 (6), o358-o360, 2005 | 5 | 2005 |
| Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity A Chialastri, S Sarkar, EE Schauer, S Lamba, SS Dey Nature Structural & Molecular Biology 31 (8), 1296-1308, 2024 | 4 | 2024 |
Alex ChialastriPostdoctoral Scholar, University of California Santa BarbaraVerified email at ucsb.edu
