| Integrative annotation of 21,037 human genes validated by full-length cDNA clones T Imanishi, T Itoh, Y Suzuki, C O'donovan, S Fukuchi, KO Koyanagi, ... PLoS biology 2 (6), e162, 2004 | 425 | 2004 |
| An anatomy of normal and malignant gene expression K Boon, EC Osorio, SF Greenhut, CF Schaefer, J Shoemaker, K Polyak, ... Proceedings of the National Academy of Sciences 99 (17), 11287-11292, 2002 | 384 | 2002 |
| Shotgun sequencing of the human transcriptome with ORF expressed sequence tags E Dias Neto, R Garcia Correa, S Verjovski-Almeida, MRS Briones, ... Proceedings of the National Academy of Sciences 97 (7), 3491-3496, 2000 | 372 | 2000 |
| Origin of genes W Gilbert, SJ De Souza, M Long Proceedings of the National Academy of Sciences 94 (15), 7698-7703, 1997 | 299 | 1997 |
| Detection and evaluation of intron retention events in the human transcriptome PAF Galante, NJ Sakabe, N Kirschbaum-Slager, SJ De Souza Rna 10 (5), 757-765, 2004 | 283 | 2004 |
| Complementary hydropathy identifies a cellular prion protein receptor VR Martins, E Graner, J Garcia-Abreu, SJ De Souza, AF Mercadante, ... Nature medicine 3 (12), 1376-1382, 1997 | 230 | 1997 |
| Toward a resolution of the introns early/late debate: only phase zero introns are correlated with the structure of ancient proteins SJ De Souza, M Long, RJ Klein, S Roy, S Lin, W Gilbert Proceedings of the National Academy of Sciences 95 (9), 5094-5099, 1998 | 217 | 1998 |
| Sequence features responsible for intron retention in human NJ Sakabe, SJ De Souza BMC genomics 8, 1-14, 2007 | 198 | 2007 |
| Evolution of the intron-exon structure of eukaryotic genes M Long, SJ de Souza, W Gilbert Current opinion in genetics & development 5 (6), 774-778, 1995 | 165 | 1995 |
| The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome AA Camargo, HPB Samaia, E Dias-Neto, DF Simão, IA Migotto, ... Proceedings of the National Academy of Sciences 98 (21), 12103-12108, 2001 | 160 | 2001 |
| Intron positions correlate with module boundaries in ancient proteins SJ De Souza, M Long, L Schoenbach, SW Roy, W Gilbert Proceedings of the National Academy of Sciences 93 (25), 14632-14636, 1996 | 151 | 1996 |
| Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line Q Zhao, OL Caballero, S Levy, BJ Stevenson, C Iseli, SJ De Souza, ... Proceedings of the National Academy of Sciences 106 (6), 1886-1891, 2009 | 150 | 2009 |
| Bioinformatics construction of the human cell surfaceome JPC Da Cunha, PAF Galante, JE De Souza, RF De Souza, PM Carvalho, ... Proceedings of the National Academy of Sciences 106 (39), 16752-16757, 2009 | 149 | 2009 |
| The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags H Brentani, OL Caballero, AA Camargo, AM da Silva, WA da Silva Jr, ... Proceedings of the National Academy of Sciences 100 (23), 13418-13423, 2003 | 145 | 2003 |
| Gene copy-number polymorphism caused by retrotransposition in humans DR Schrider, FCP Navarro, PAF Galante, RB Parmigiani, AA Camargo, ... PLoS genetics 9 (1), e1003242, 2013 | 118 | 2013 |
| Relationship between “proto-splice sites” and intron phases: evidence from dicodon analysis M Long, SJ De Souza, C Rosenberg, W Gilbert Proceedings of the National Academy of Sciences 95 (1), 219-223, 1998 | 116 | 1998 |
| Collagen binding site in collagenase can be determined using the concept of sense-antisense peptide interactions. SJ De Souza, R Brentani Journal of Biological Chemistry 267 (19), 13763-13767, 1992 | 116 | 1992 |
| Gene expression arrays in cancer research: methods and applications RR Brentani, DM Carraro, S Verjovski-Almeida, EM Reis, EJ Neves, ... Critical reviews in oncology/hematology 54 (2), 95-105, 2005 | 107 | 2005 |
| Long-range heterogeneity at the 3′ ends of human mRNAs C Iseli, BJ Stevenson, SJ De Souza, HB Samaia, AA Camargo, ... Genome research 12 (7), 1068-1074, 2002 | 101 | 2002 |
| Exon shuffling and the origin of the mitochondrial targeting function in plant cytochrome c1 precursor. M Long, SJ De Souza, C Rosenberg, W Gilbert Proceedings of the National Academy of Sciences 93 (15), 7727-7731, 1996 | 101 | 1996 |
