Fábio Madeira

Cited by

	All	Since 2020
Citations	27396	26332
h-index	20	20
i10-index	21	21

7000

3500

1750

5250

2019202020212022202320242025858 3050 4499 5236 5350 6479 1696

Public access

View all

22 articles

0 articles

available

not available

Based on funding mandates

Co-authors

Rodrigo LopezHead of Web Production. EMBL-EBI (Retired August 2022)Verified email at ebi.ac.uk
Robert D. FinnMicrobiome Informatics Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SDVerified email at ebi.ac.uk
Geoffrey J BartonProfessor of Bioinformatics, University of DundeeVerified email at dundee.ac.uk
Christian ColeReader (Professor) - University of DundeeVerified email at dundee.ac.uk
Carol MacKintoshProfessor of Molecular Signalling, University of Dundee, ScotlandVerified email at dundee.ac.uk
Michele TintiThe Wellcome Centre for Anti-Infectives Research, Dundee UniversityVerified email at dundee.ac.uk
Hervé MénagerInstitut PasteurVerified email at pasteur.fr
Michael R. CrusoeCommon Workflow Language project, and othersVerified email at commonwl.org
Pablo Moreno CortezTechnical Coordinator, European Bioinformatics InstituteVerified email at ebi.ac.uk
Anton I. PetrovDirector of Riboscope Ltd | Open to opportunities in RNA bioinformaticsVerified email at antonpetrov.com
Stuart A. MacGowanSenior Bioinformatics Scientist, School of Life Sciences, Dundee UniversityVerified email at dundee.ac.uk
Thiago Britto-BorgesPostdoctoral Researcher in Biomedical Data Sciences at the Heidelberg University HospitalVerified email at uni-heidelberg.de
James B ProcterCollege of Life Sciences, University of Dundee.Verified email at dundee.ac.uk
Ludwig KrippahlNOVA LINCS, Associate Member.Verified email at fct.unl.pt
Yasset Perez-RiverolTeam Coordinator, Proteomics Resources, EMBL-EBI, UKVerified email at ebi.ac.uk
Pedro BarahonaProfessor of Computer Science, New University of LisbonVerified email at fct.unl.pt
Sarah ButcherEMBL-EBIVerified email at ebi.ac.uk

Fábio Madeira

Bioinformatics Project Lead, EMBL-EBI

Verified email at ebi.ac.uk - Homepage

Bioinformatics Web Services Machine Learning Sequence Analysis


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
UniProt: a worldwide hub of protein knowledge UniProt Consortium Nucleic acids research 47 (D1), D506-D515, 2019	7128	2019
UniProt: the universal protein knowledgebase in 2021 Nucleic acids research 49 (D1), D480-D489, 2021	6258	2021
The EMBL-EBI search and sequence analysis tools APIs in 2019 F Madeira, YM Park, J Lee, N Buso, T Gur, N Madhusoodanan, ... Nucleic acids research 47 (W1), W636-W641, 2019	4597	2019
UniProt: the universal protein knowledgebase in 2023 Nucleic Acids Research 51 (D1), D523-D531, 2023	4167	2023
Search and sequence analysis tools services from EMBL-EBI in 2022 F Madeira, M Pearce, ARN Tivey, P Basutkar, J Lee, O Edbali, ... Nucleic acids research 50 (W1), W276-W279, 2022	2113	2022
InterPro in 2019: improving coverage, classification and access to protein sequence annotations AL Mitchell, TK Attwood, PC Babbitt, M Blum, P Bork, A Bridge, SD Brown, ... Nucleic acids research 47 (D1), D351-D360, 2019	1578	2019
The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024 F Madeira, N Madhusoodanan, J Lee, A Eusebi, A Niewielska, ARN Tivey, ... Nucleic acids research 52 (W1), W521-W525, 2024	353	2024
Annotation of biologically relevant ligands in UniProtKB using ChEBI E Coudert, S Gehant, E De Castro, M Pozzato, D Baratin, T Neto, ... Bioinformatics 39 (1), btac793, 2023	234	2023
14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides F Madeira, M Tinti, G Murugesan, E Berrett, M Stafford, R Toth, C Cole, ... Bioinformatics 31 (14), 2276-2283, 2015	223	2015
A crowdsourcing open platform for literature curation in UniProt Y Wang, Q Wang, H Huang, W Huang, Y Chen, PB McGarvey, CH Wu, ... PLoS biology 19 (12), e3001464, 2021	135	2021
R2DT is a framework for predicting and visualising RNA secondary structure using templates BA Sweeney, D Hoksza, EP Nawrocki, CE Ribas, F Madeira, JJ Cannone, ... Nature Communications 12 (1), 3494, 2021	97	2021
PDBe-KB: a community-driven resource for structural and functional annotations M Varadi, J Berrisford, M Deshpande, SS Nair, A Gutmanas, D Armstrong, ... Nucleic Acids Research 48 (D1), D344-D353, 2020	87	2020
The European nucleotide archive in 2021 C Cummins, A Ahamed, R Aslam, J Burgin, R Devraj, O Edbali, D Gupta, ... Nucleic acids research 50 (D1), D106-D110, 2022	80	2022
ANIA: ANnotation and Integrated Analysis of the 14-3-3 interactome M Tinti, F Madeira, G Murugesan, G Hoxhaj, R Toth, C MacKintosh Database 2014, bat085, 2014	68	2014
UniProt tools: BLAST, align, peptide search, and ID mapping R Zaru, S Orchard, UniProt Consortium Current protocols 3 (3), e697, 2023	58	2023
JABAWS 2.2 distributed web services for Bioinformatics: protein disorder, conservation and RNA secondary structure PV Troshin, JB Procter, A Sherstnev, DL Barton, F Madeira, GJ Barton Bioinformatics 34 (11), 1939-1940, 2018	52	2018
Recommendations for the packaging and containerizing of bioinformatics software B Gruening, O Sallou, P Moreno, F da Veiga Leprevost, H Ménager, ... F1000Research 7, ISCB Comm J-742, 2019	50	2019
Using EMBL‐EBI services via web interface and programmatically via web services F Madeira, N Madhusoodanan, J Lee, ARN Tivey, R Lopez Current protocols in bioinformatics 66 (1), e74, 2019	41	2019
UniProt and mass spectrometry-based proteomics—a 2-way working relationship EH Bowler-Barnett, J Fan, J Luo, M Magrane, MJ Martin, S Orchard Molecular & Cellular Proteomics 22 (8), 2023	23	2023
The Dundee resource for sequence analysis and structure prediction SA MacGowan, F Madeira, T Britto‐Borges, M Warowny, A Drozdetskiy, ... Protein Science 29 (1), 277-297, 2020	21	2020

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Follow

Cited by

Co-authors