| Analysis of cell fate from single-cell gene expression profiles in C. elegans X Liu, F Long, H Peng, SJ Aerni, M Jiang, A Sanchez-Blanco, JI Murray, ... Cell 139 (3), 623-633, 2009 | 175 | 2009 |
| Reconstructing cancer genomes from paired-end sequencing data L Oesper, A Ritz, SJ Aerni, R Drebin, BJ Raphael BMC bioinformatics 13, 1-13, 2012 | 57 | 2012 |
| A sequence-based survey of the complex structural organization of tumor genomes BJ Raphael, S Volik, P Yu, C Wu, G Huang, EV Linardopoulou, BJ Trask, ... Genome biology 9, 1-17, 2008 | 43 | 2008 |
| Computational identification of CDR3 sequence archetypes among immunoglobulin sequences in chronic lymphocytic leukemia BT Messmer, BJ Raphael, SJ Aerni, GF Widhopf, LZ Rassenti, JG Gribben, ... Leukemia research 33 (3), 368-376, 2009 | 28 | 2009 |
| Reconstruction of genealogical relationships with applications to Phase III of HapMap S Kyriazopoulou-Panagiotopoulou, D Kashef Haghighi, SJ Aerni, ... Bioinformatics 27 (13), i333-i341, 2011 | 22 | 2011 |
| Automated cellular annotation for high-resolution images of adult Caenorhabditis elegans SJ Aerni, X Liu, CB Do, SS Gross, A Nguyen, SD Guo, F Long, H Peng, ... Bioinformatics 29 (13), i18-i26, 2013 | 12 | 2013 |
| Element identification in database AK Crow, SJ Aerni, H Emir-Farinas, GS Muralidhar, R Radhakrishnan US Patent 9,569,464, 2017 | 9 | 2017 |
| Digital drivers in the age of massive datasets S Aerni, H Farinas, G Muralidhar XRDS: Crossroads, The ACM Magazine for Students 21 (4), 60-66, 2015 | 4 | 2015 |
| In-database single-nucleotide genetic variant analysis SJ Aerni, NL Sio US Patent 9,594,777, 2017 | 1 | 2017 |
| 10 years of the international conference on research in computational molecular biology (RECOMB) SJ Aerni, E Eskin Annual International Conference on Research in Computational Molecular …, 2006 | 1 | 2006 |
| Rapid processing of biological sequence data SJ Aerni, M Micsinai US Patent 9,703,925, 2017 | | 2017 |
| Single-Cell Gene Expression Analysis in C. elegans SJ Aerni Stanford University, 2012 | | 2012 |
| A sequence-based survey of the complex structural organization of tumor genomes C Collins, BJ Raphael, S Volik, P Yu, C Wu, G Huang, EV Linardopoulou, ... Genome Biology 9 (LBNL-195E), 2008 | | 2008 |
| A Bioinformatic Approach to CLL IGHV Sequence Analysis Identifies Extensive Ig Sequence Archetypes among BothMutated and Unmutated Sequences. BT Messmer, BJ Raphael, SJ Aerni, GF Widhopf, LZ Rassenti, TL Toy, ... Blood, The Journal of the American Society of Hematology 106 (11), 176-176, 2005 | | 2005 |
| Prognostic factors and pathogenesis A Janssens, N Van Roy, L Noens, F Speleman, F Offner, BT Messmer, ... Leukemia & Lymphoma 46 (1), S17, 2005 | | 2005 |
