| Transforming the language of life: transformer neural networks for protein prediction tasks A Nambiar, M Heflin, S Liu, S Maslov, M Hopkins, A Ritz Proceedings of the 11th ACM international conference on bioinformatics …, 2020 | 161 | 2020 |
| Characterization of structural variants with single molecule and hybrid sequencing approaches A Ritz, A Bashir, S Sindi, D Hsu, I Hajirasouliha, BJ Raphael Bioinformatics 30 (24), 3458-3466, 2014 | 108 | 2014 |
| Quantitative time-resolved phosphoproteomic analysis of mast cell signaling L Cao, K Yu, C Banh, V Nguyen, A Ritz, BJ Raphael, Y Kawakami, ... The Journal of Immunology 179 (9), 5864-5876, 2007 | 92 | 2007 |
| Metabolic reprogramming ensures cancer cell survival despite oncogenic signaling blockade H Lue, J Podolak, K Kolahi, L Cheng, S Rao, D Garg, CH Xue, JK Rantala, ... Genes & Development 31 (20), 2067-2084, 2017 | 82 | 2017 |
| A new approach for quantitative phosphoproteomic dissection of signaling pathways applied to T cell receptor activation V Nguyen, L Cao, JT Lin, N Hung, A Ritz, K Yu, R Jianu, SP Ulin, ... Molecular & cellular proteomics 8 (11), 2418-2431, 2009 | 80 | 2009 |
| Signaling hypergraphs A Ritz, AN Tegge, H Kim, CL Poirel, TM Murali Trends in biotechnology 32 (7), 356-362, 2014 | 75 | 2014 |
| Pathways on demand: automated reconstruction of human signaling networks A Ritz, CL Poirel, AN Tegge, N Sharp, K Simmons, A Powell, SD Kale, ... NPJ systems biology and applications 2 (1), 1-9, 2016 | 69 | 2016 |
| Environmental chemistry through intelligent atmospheric data analysis DS Gross, R Atlas, J Rzeszotarski, E Turetsky, J Christensen, S Benzaid, ... Environmental Modelling & Software 25 (6), 760-769, 2010 | 60 | 2010 |
| Reconstructing cancer genomes from paired-end sequencing data L Oesper, A Ritz, SJ Aerni, R Drebin, BJ Raphael BMC bioinformatics 13, 1-13, 2012 | 57 | 2012 |
| Gremlin: an interactive visualization model for analyzing genomic rearrangements T O'Brien, A Ritz, B Raphael, D Laidlaw IEEE transactions on visualization and computer graphics 16 (6), 918-926, 2010 | 52 | 2010 |
| Distance measures for tumor evolutionary trees Z DiNardo, K Tomlinson, A Ritz, L Oesper Bioinformatics 36 (7), 2090-2097, 2020 | 48 | 2020 |
| Structural variation analysis with strobe reads A Ritz, A Bashir, BJ Raphael Bioinformatics 26 (10), 1291-1298, 2010 | 48 | 2010 |
| Pathway analysis with signaling hypergraphs A Ritz, TM Murali Proceedings of the 5th ACM Conference on Bioinformatics, Computational …, 2014 | 44 | 2014 |
| Discovery of phosphorylation motif mixtures in phosphoproteomics data A Ritz, G Shakhnarovich, AR Salomon, BJ Raphael Bioinformatics 25 (1), 14-21, 2009 | 43 | 2009 |
| Differentially private ANOVA testing Z Campbell, A Bray, A Ritz, A Groce 2018 1st International Conference on Data Intelligence and Security (ICDIS …, 2018 | 39 | 2018 |
| Adapting k-medians to generate normalized cluster centers BJ Anderson, DS Gross, DR Musicant, AM Ritz, TG Smith, LE Steinberg Proceedings of the 2006 SIAM International Conference on Data Mining, 165-175, 2006 | 33 | 2006 |
| Hypergraph-based connectivity measures for signaling pathway topologies N Franzese, A Groce, TM Murali, A Ritz PLoS computational biology 15 (10), e1007384, 2019 | 31 | 2019 |
| Quantitative phosphoproteomics reveals SLP-76 dependent regulation of PAG and Src family kinases in T cells L Cao, Y Ding, N Hung, K Yu, A Ritz, BJ Raphael, AR Salomon Public Library of Science 7 (10), e46725, 2012 | 30 | 2012 |
| Current and future directions in network biology M Zitnik, MM Li, A Wells, K Glass, D Morselli Gysi, A Krishnan, TM Murali, ... Bioinformatics advances 4 (1), vbae099, 2024 | 29 | 2024 |
| Detection of recurrent rearrangement breakpoints from copy number data A Ritz, PL Paris, MM Ittmann, C Collins, BJ Raphael BMC bioinformatics 12, 1-15, 2011 | 29 | 2011 |
Ben RaphaelProfessor of Computer Science, Princeton UniversityVerified email at princeton.edu