Articles with public access mandates - Mark BashamLearn more
Not available anywhere: 1
Tomographic Reconstruction for Synchrotron Tomography
DY Parkinson, D Gursoy, DM Pelt, S Venkatakrishnan, R Archibald, ...
HANDBOOK ON BIG DATA AND MACHINE LEARNING IN THE PHYSICAL SCIENCES: Volume 2 …, 2020
Mandates: US Department of Energy
Available somewhere: 33
Data analysis workbench (DAWN)
M Basham, J Filik, MT Wharmby, PCY Chang, B El Kassaby, M Gerring, ...
Journal of synchrotron radiation 22 (3), 853-858, 2015
Mandates: UK Engineering and Physical Sciences Research Council
I12: the joint engineering, environment and processing (JEEP) beamline at diamond light source
M Drakopoulos, T Connolley, C Reinhard, R Atwood, O Magdysyuk, N Vo, ...
Journal of synchrotron radiation 22 (3), 828-838, 2015
Mandates: UK Science and Technology Facilities Council, Wellcome Trust
Electronic structure of point defects in controlled self-doping of the (110) surface: Combined photoemission spectroscopy and density functional theory study
M Nolan, SD Elliott, JS Mulley, RA Bennett, M Basham, P Mulheran
Physical Review B—Condensed Matter and Materials Physics 77 (23), 235424, 2008
Mandates: Higher Education Authority, Ireland
Can we predict T cell specificity with digital biology and machine learning?
D Hudson, RA Fernandes, M Basham, G Ogg, H Koohy
Nature Reviews Immunology 23 (8), 511-521, 2023
Mandates: UK Biotechnology and Biological Sciences Research Council, UK Medical …
SuRVoS: super-region volume segmentation workbench
I Luengo, MC Darrow, MC Spink, Y Sun, W Dai, CY He, W Chiu, ...
Journal of Structural Biology 198 (1), 43-53, 2017
Mandates: US National Institutes of Health
Chemical imaging of single catalyst particles with scanning μ-XANES-CT and μ-XRF-CT
SWT Price, K Ignatyev, K Geraki, M Basham, J Filik, NT Vo, PT Witte, ...
Physical Chemistry Chemical Physics 17 (1), 521-529, 2015
Mandates: UK Engineering and Physical Sciences Research Council
Surface and interstitial Ti diffusion at the rutile TiO 2 (110) surface
PA Mulheran, M Nolan, CS Browne, M Basham, E Sanville, RA Bennett
Physical Chemistry Chemical Physics 12 (33), 9763-9771, 2010
Mandates: Higher Education Authority, Ireland, Science Foundation Ireland
Using Scipion for stream image processing at Cryo-EM facilities
J Gómez-Blanco, JM de la Rosa-Trevín, R Marabini, L Del Cano, ...
Journal of structural biology 204 (3), 457-463, 2018
Mandates: Knut and Alice Wallenberg Foundation, UK Biotechnology and Biological …
Visualization of membrane protein crystals in lipid cubic phase using X-ray imaging
AJ Warren, W Armour, D Axford, M Basham, T Connolley, DR Hall, ...
Acta Crystallographica Section D: Biological Crystallography 69 (7), 1252-1259, 2013
Mandates: UK Biotechnology and Biological Sciences Research Council
A massively multi-scale approach to characterizing tissue architecture by synchrotron micro-CT applied to the human placenta
WM Tun, G Poologasundarampillai, H Bischof, G Nye, ONF King, ...
Journal of The Royal Society Interface 18 (179), 20210140, 2021
Mandates: UK Engineering and Physical Sciences Research Council, UK Medical Research …
Cryo-plasma FIB/SEM volume imaging of biological specimens
M Dumoux, T Glen, JLR Smith, EML Ho, LMA Perdigão, A Pennington, ...
Elife 12, e83623, 2023
Mandates: UK Engineering and Physical Sciences Research Council, Wellcome Trust, UK …
Beamline K11 DIAD: A new instrument for dual imaging and diffraction at Diamond Light Source
C Reinhard, M Drakopoulos, SI Ahmed, H Deyhle, A James, ...
Journal of Synchrotron Radiation 28 (6), 1985-1995, 2021
Mandates: US Department of Energy, UK Engineering and Physical Sciences Research Council
SuRVoS 2: accelerating annotation and segmentation for large volumetric bioimage workflows across modalities and scales
A Pennington, ONF King, WM Tun, EML Ho, I Luengo, MC Darrow, ...
Frontiers in Cell and Developmental Biology 10, 842342, 2022
Mandates: UK Engineering and Physical Sciences Research Council, Wellcome Trust
Volume segmentation and analysis of biological materials using SuRVoS (Super-region Volume Segmentation) Workbench
MC Darrow, I Luengo, M Basham, MC Spink, S Irvine, AP French, ...
Journal of visualized experiments: JoVE, 2017
Mandates: US National Institutes of Health
Parakeet: a digital twin software pipeline to assess the impact of experimental parameters on tomographic reconstructions for cryo-electron tomography
JM Parkhurst, M Dumoux, M Basham, D Clare, CA Siebert, T Varslot, ...
Open Biology 11 (10), 210160, 2021
Mandates: UK Engineering and Physical Sciences Research Council, Wellcome Trust
A comparison of clustering models for inference of t cell receptor antigen specificity
D Hudson, A Lubbock, M Basham, H Koohy
ImmunoInformatics 13, 100033, 2024
Mandates: UK Biotechnology and Biological Sciences Research Council, UK Medical …
Online citizen science with the Zooniverse for analysis of biological volumetric data
P Smith, ONF King, A Pennington, W Tun, M Basham, ML Jones, ...
Histochemistry and Cell Biology 160 (3), 253-276, 2023
Mandates: Versus Arthritis, UK, Cancer Research UK, UK Medical Research Council …
Multi-Modal Synchrotron Characterization: Modern Techniques and Data Analysis
YCK Chen-Wiegart, SI Campbell, KG Yager, Y Liu, AI Frenkel, L Yang, ...
HANDBOOK ON BIG DATA AND MACHINE LEARNING IN THE PHYSICAL SCIENCES: Volume 2 …, 2020
Mandates: US National Science Foundation, US Department of Energy
Okapi-EM: A napari plugin for processing and analyzing cryogenic serial focused ion beam/scanning electron microscopy images
LMA Perdigão, EML Ho, ZC Cheng, NBY Yee, T Glen, L Wu, M Grange, ...
Biological Imaging 3, e9, 2023
Mandates: UK Engineering and Physical Sciences Research Council, Wellcome Trust, UK …
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