| ViennaRNA Package 2.0 R Lorenz, SH Bernhart, C Höner zu Siederdissen, H Tafer, C Flamm, ... Algorithms for molecular biology 6, 1-14, 2011 | 4966 | 2011 |
| The vienna RNA websuite AR Gruber, R Lorenz, SH Bernhart, R Neuböck, IL Hofacker Nucleic acids research 36 (suppl_2), W70-W74, 2008 | 2596 | 2008 |
| The ViennaRNA web services AR Gruber, SH Bernhart, R Lorenz RNA bioinformatics, 307-326, 2015 | 180 | 2015 |
| Predicting RNA secondary structures from sequence and probing data R Lorenz, MT Wolfinger, A Tanzer, IL Hofacker Methods 103, 86-98, 2016 | 124 | 2016 |
| RNA folding with hard and soft constraints R Lorenz, IL Hofacker, PF Stadler Algorithms for Molecular Biology 11, 1-13, 2016 | 116 | 2016 |
| SHAPE directed RNA folding R Lorenz, D Luntzer, IL Hofacker, PF Stadler, MT Wolfinger Bioinformatics 32 (1), 145-147, 2016 | 114 | 2016 |
| ViennaRNA Package 2.0 PF Stadler, IL Hofacker, R Lorenz, SH Bernhart, H Tafer, C Siederdissen Algorithms, 2011 | 101 | 2011 |
| Höner zu Siederdissen C et al (2011) ViennaRNA package 2.0 R Lorenz, SH Bernhart Algorithms Mol Biol 6 (26), 7188-6, 0 | 83 | |
| TSSAR: TSS annotation regime for dRNA-seq data F Amman, MT Wolfinger, R Lorenz, IL Hofacker, PF Stadler, S Findeiß BMC bioinformatics 15, 1-11, 2014 | 66 | 2014 |
| Design criteria for synthetic riboswitches acting on transcription M Wachsmuth, G Domin, R Lorenz, R Serfling, S Findeiß, PF Stadler, ... RNA biology 12 (2), 221-231, 2015 | 58 | 2015 |
| Asymmetry of stem cell fate and the potential impact of the niche: observations, simulations, and interpretations I Roeder, R Lorenz Stem cell reviews 2, 171-180, 2006 | 58 | 2006 |
| 2D meets 4G: G-quadruplexes in RNA secondary structure prediction R Lorenz, SH Bernhart, J Qin, CH zu Siederdissen, A Tanzer, F Amman, ... IEEE/ACM transactions on computational biology and bioinformatics 10 (4 …, 2013 | 53 | 2013 |
| Model-free RNA sequence and structure alignment informed by SHAPE probing reveals a conserved alternate secondary structure for 16S rRNA CA Lavender, R Lorenz, G Zhang, R Tamayo, IL Hofacker, KM Weeks PLOS computational biology 11 (5), e1004126, 2015 | 45 | 2015 |
| Animal snoRNAs and scaRNAs with exceptional structures M Marz, AR Gruber, C Höner zu Siederdissen, F Amman, S Badelt, ... RNA biology 8 (6), 938-946, 2011 | 44 | 2011 |
| Nematode sbRNAs: homologs of vertebrate Y RNAs I Boria, AR Gruber, A Tanzer, SH Bernhart, R Lorenz, MM Mueller, ... Journal of molecular evolution 70, 346-358, 2010 | 43 | 2010 |
| Evolving better RNAfold structure prediction WB Langdon, J Petke, R Lorenz Genetic Programming: 21st European Conference, EuroGP 2018, Parma, Italy …, 2018 | 42 | 2018 |
| RNA modifications in structure prediction–Status quo and future challenges A Tanzer, IL Hofacker, R Lorenz Methods 156, 32-39, 2019 | 40 | 2019 |
| 2D projections of RNA folding landscapes R Lorenz, C Flamm, IL Hofacker Gesellschaft für Informatik eV, 2009 | 37 | 2009 |
| A novel view on stem cell development: analysing the shape of cellular genealogies I Glauche, R Lorenz, D Hasenclever, I Roeder Cell Proliferation 42 (2), 248-263, 2009 | 35 | 2009 |
| Caveats to deep learning approaches to RNA secondary structure prediction C Flamm, J Wielach, MT Wolfinger, S Badelt, R Lorenz, IL Hofacker Frontiers in Bioinformatics 2, 835422, 2022 | 25 | 2022 |
