| Identification of genes periodically expressed in the human cell cycle and their expression in tumors ML Whitfield, G Sherlock, AJ Saldanha, JI Murray, CA Ball, KE Alexander, ... Molecular biology of the cell 13 (6), 1977-2000, 2002 | 1926 | 2002 |
| Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ... Science 330 (6012), 1775-1787, 2010 | 1159 | 2010 |
| SAVER: gene expression recovery for single-cell RNA sequencing M Huang, J Wang, E Torre, H Dueck, S Shaffer, R Bonasio, JI Murray, ... Nature methods 15 (7), 539-542, 2018 | 741 | 2018 |
| Systemic and cell type-specific gene expression patterns in scleroderma skin ML Whitfield, DR Finlay, JI Murray, OG Troyanskaya, JT Chi, ... Proceedings of the National Academy of Sciences 100 (21), 12319-12324, 2003 | 521 | 2003 |
| A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution JS Packer, Q Zhu, C Huynh, P Sivaramakrishnan, E Preston, H Dueck, ... Science 365 (6459), eaax1971, 2019 | 489 | 2019 |
| Automated cell lineage tracing in Caenorhabditis elegans Z Bao, JI Murray, T Boyle, SL Ooi, MJ Sandel, RH Waterston Proceedings of the National Academy of Sciences 103 (8), 2707-2712, 2006 | 426 | 2006 |
| The role of heat shock transcription factor 1 in the genome-wide regulation of the mammalian heat shock response ND Trinklein, JI Murray, SJ Hartman, D Botstein, RM Myers Molecular biology of the cell 15 (3), 1254-1261, 2004 | 406 | 2004 |
| The role of heat shock transcription factor 1 in the genome-wide regulation of the mammalian heat shock response ND Trinklein, JI Murray, SJ Hartman, D Botstein, RM Myers Molecular biology of the cell 15 (3), 1254-1261, 2004 | 406 | 2004 |
| Diverse and specific gene expression responses to stresses in cultured human cells JI Murray, ML Whitfield, ND Trinklein, RM Myers, PO Brown, D Botstein Molecular biology of the cell 15 (5), 2361-2374, 2004 | 386 | 2004 |
| A genome-scale resource for in vivo tag-based protein function exploration in C. elegans M Sarov, JI Murray, K Schanze, A Pozniakovski, W Niu, K Angermann, ... Cell 150 (4), 855-866, 2012 | 302 | 2012 |
| Genomics in C. elegans: so many genes, such a little worm LDW Hillier, A Coulson, JI Murray, Z Bao, JE Sulston, RH Waterston Genome research 15 (12), 1651-1660, 2005 | 292 | 2005 |
| Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans W Niu, ZJ Lu, M Zhong, M Sarov, JI Murray, CM Brdlik, J Janette, C Chen, ... Genome research 21 (2), 245-254, 2011 | 269 | 2011 |
| Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/FOXA in Development and Environmental Response M Zhong, W Niu, ZJ Lu, M Sarov, JI Murray, J Janette, D Raha, ... PLoS genetics 6 (2), e1000848, 2010 | 220 | 2010 |
| Automated analysis of embryonic gene expression with cellular resolution in C. elegans JI Murray, Z Bao, TJ Boyle, ME Boeck, BL Mericle, TJ Nicholas, Z Zhao, ... Nature methods 5 (8), 703-709, 2008 | 220 | 2008 |
| Analysis of cell fate from single-cell gene expression profiles in C. elegans X Liu, F Long, H Peng, SJ Aerni, M Jiang, A Sanchez-Blanco, JI Murray, ... Cell 139 (3), 623-633, 2009 | 176 | 2009 |
| Multidimensional regulation of gene expression in the C. elegans embryo JI Murray, TJ Boyle, E Preston, D Vafeados, B Mericle, P Weisdepp, ... Genome research 22 (7), 1282-1294, 2012 | 170 | 2012 |
| Global analysis of RNA secondary structure in two metazoans F Li, Q Zheng, P Ryvkin, I Dragomir, Y Desai, S Aiyer, O Valladares, ... Cell Reports 1 (1), 69-82, 2012 | 150 | 2012 |
| Rare cell detection by single-Cell RNA sequencing as guided by single-molecule RNA FISH E Torre, H Dueck, S Shaffer, J Gospocic, R Gupte, R Bonasio, J Kim, ... Cell systems 6 (2), 171-179. e5, 2018 | 136 | 2018 |
| Gene expression distribution deconvolution in single-cell RNA sequencing J Wang, M Huang, E Torre, H Dueck, S Shaffer, J Murray, A Raj, M Li, ... Proceedings of the National Academy of Sciences 115 (28), E6437-E6446, 2018 | 133 | 2018 |
| Regulatory analysis of the C. elegans genome with spatiotemporal resolution CL Araya, T Kawli, A Kundaje, L Jiang, B Wu, D Vafeados, R Terrell, ... Nature 512 (7515), 400-405, 2014 | 131 | 2014 |
Zhirong BaoDevelopmental Biology Program, Sloan-Kettering InstituteVerified email at mskcc.org
