| Amber 2023 DA Case, HM Aktulga, K Belfon, IY Ben-Shalom, JT Berryman, SR Brozell, ... University of California, San Francisco, 2023 | 7076* | 2023 |
| Building water models: a different approach S Izadi, R Anandakrishnan, AV Onufriev The journal of physical chemistry letters 5 (21), 3863-3871, 2014 | 1055 | 2014 |
| Accuracy limit of rigid 3-point water models S Izadi, AV Onufriev The Journal of Chemical Physics 145 (7), 074501, 2016 | 312 | 2016 |
| Water models for biomolecular simulations AV Onufriev, S Izadi Wiley Interdisciplinary Reviews: Computational Molecular Science 8 (2), e1347, 2018 | 210 | 2018 |
| General purpose water model can improve atomistic simulations of intrinsically disordered proteins PS Shabane, S Izadi, AV Onufriev Journal of chemical theory and computation 15 (4), 2620-2634, 2019 | 119 | 2019 |
| Negative regulation of RAF kinase activity by ATP is overcome by 14-3-3-induced dimerization NPD Liau, TJ Wendorff, JG Quinn, M Steffek, W Phung, P Liu, J Tang, ... Nature structural & molecular biology 27 (2), 134-141, 2020 | 87 | 2020 |
| Fc galactosylation follows consecutive reaction kinetics and enhances immunoglobulin G hexamerization for complement activation B Wei, X Gao, L Cadang, S Izadi, P Liu, HM Zhang, E Hecht, J Shim, ... MAbs 13 (1), 1893427, 2021 | 57 | 2021 |
| Protein–Ligand Electrostatic Binding Free Energies from Explicit and Implicit Solvation S Izadi, B Aguilar, AV Onufriev Journal of Chemical Theory and Computation 11 (9), 4450-4459, 2015 | 55 | 2015 |
| Dissecting the molecular basis of high viscosity of monospecific and bispecific IgG antibodies C Tilegenova, S Izadi, J Yin, CS Huang, J Wu, D Ellerman, SG Hymowitz, ... MAbs 12 (1), 1692764, 2020 | 44 | 2020 |
| Why computed protein folding landscapes are sensitive to the water model R Anandakrishnan, S Izadi, AV Onufriev Journal of chemical theory and computation 15 (1), 625-636, 2018 | 40 | 2018 |
| Multiscale coarse-grained approach to investigate self-association of antibodies S Izadi, TW Patapoff, BT Walters Biophysical journal 118 (11), 2741-2754, 2020 | 39 | 2020 |
| Point charges optimally placed to represent the multipole expansion of charge distributions R Anandakrishnan, C Baker, S Izadi, AV Onufriev PloS one 8 (7), e67715, 2013 | 38 | 2013 |
| Structural basis for SHOC2 modulation of RAS signalling NPD Liau, MC Johnson, S Izadi, L Gerosa, M Hammel, JM Bruning, ... Nature 609 (7926), 400-407, 2022 | 36 | 2022 |
| Antibody–receptor interactions mediate antibody-dependent cellular cytotoxicity Y Sun, S Izadi, M Callahan, G Deperalta, AT Wecksler Journal of Biological Chemistry 297 (1), 2021 | 36 | 2021 |
| Grid-based surface generalized Born model for calculation of electrostatic binding free energies N Forouzesh, S Izadi, AV Onufriev Journal of chemical information and modeling 57 (10), 2505-2513, 2017 | 36 | 2017 |
| Implicit Solvent Model for Million-Atom Atomistic Simulations: Insights into the Organization of 30-nm Chromatin Fiber S Izadi, R Anandakrishnan, AV Onufriev Journal of Chemical Theory and Computation, 2016 | 36 | 2016 |
| Accuracy comparison of generalized Born models in the calculation of electrostatic binding free energies S Izadi, RC Harris, MO Fenley, AV Onufriev Journal of chemical theory and computation 14 (3), 1656-1670, 2018 | 35 | 2018 |
| A study on the measurement of mean velocity and its convergence in molecular dynamics simulations SMH Karimian, S Izadi, AB Farimani International Journal for Numerical Methods in Fluids 67 (12), 2130-2140, 2011 | 18 | 2011 |
| Bin size determination for the measurement of mean flow velocity in molecular dynamics simulations SMH Karimian, S Izadi International Journal for Numerical Methods in Fluids 71 (7), 930-938, 2013 | 16 | 2013 |
| Fast polarizable water model for atomistic simulations Y Xiong, S Izadi, AV Onufriev Journal of chemical theory and computation 18 (10), 6324-6333, 2022 | 15 | 2022 |
Alexey OnufrievVirginia TechVerified email at vt.edu