| Integrated modeling program, applied chemical theory (IMPACT) JL Banks, HS Beard, Y Cao, AE Cho, W Damm, R Farid, AK Felts, ... Journal of computational chemistry 26 (16), 1752-1780, 2005 | 1495 | 2005 |
| Enthalpy− entropy and cavity decomposition of alkane hydration free energies: numerical results and implications for theories of hydrophobic solvation E Gallicchio, MM Kubo, RM Levy The Journal of Physical Chemistry B 104 (26), 6271-6285, 2000 | 426 | 2000 |
| AGBNP: An analytic implicit solvent model suitable for molecular dynamics simulations and high‐resolution modeling E Gallicchio, RM Levy Journal of computational chemistry 25 (4), 479-499, 2004 | 406 | 2004 |
| Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex V Mekler, E Kortkhonjia, J Mukhopadhyay, J Knight, A Revyakin, ... Cell 108 (5), 599-614, 2002 | 354 | 2002 |
| On the nonpolar hydration free energy of proteins: surface area and continuum solvent models for the solute− solvent interaction energy RM Levy, LY Zhang, E Gallicchio, AK Felts Journal of the American Chemical Society 125 (31), 9523-9530, 2003 | 335 | 2003 |
| Simplified amino acid alphabets for protein fold recognition and implications for folding LR Murphy, A Wallqvist, RM Levy Protein engineering 13 (3), 149-152, 2000 | 333 | 2000 |
| Computer simulations with explicit solvent: recent progress in the thermodynamic decomposition of free energies and in modeling electrostatic effects RM Levy, E Gallicchio Annual review of physical chemistry 49 (1), 531-567, 1998 | 332 | 1998 |
| Evaluation of the configurational entropy for proteins: application to molecular dynamics simulations of an α-helix RM Levy, M Karplus, J Kushick, D Perahia Macromolecules 17 (7), 1370-1374, 1984 | 310 | 1984 |
| The SGB/NP hydration free energy model based on the surface generalized born solvent reaction field and novel nonpolar hydration free energy estimators E Gallicchio, LY Zhang, RM Levy Journal of computational chemistry 23 (5), 517-529, 2002 | 300 | 2002 |
| Quasi‐harmonic method for studying very low frequency modes in proteins RM Levy, AR Srinivasan, WK Olson, JA McCammon Biopolymers: Original Research on Biomolecules 23 (6), 1099-1112, 1984 | 297 | 1984 |
| Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel J Mukhopadhyay, E Sineva, J Knight, RM Levy, RH Ebright Molecular cell 14 (6), 739-751, 2004 | 258 | 2004 |
| Computer simulations of the dielectric properties of water: Studies of the simple point charge and transferrable intermolecular potential models HE Alper, RM Levy The Journal of chemical physics 91 (2), 1242-1251, 1989 | 250 | 1989 |
| An anisotropic polarizable water model: incorporation of all-atom polarizabilities into molecular mechanics force fields DN Bernardo, Y Ding, K Krogh-Jespersen, RM Levy The Journal of Physical Chemistry 98 (15), 4180-4187, 1994 | 246 | 1994 |
| Conformational analysis of the DFG-out kinase motif and biochemical profiling of structurally validated type II inhibitors RSK Vijayan, P He, V Modi, KC Duong-Ly, H Ma, JR Peterson, ... Journal of medicinal chemistry 58 (1), 466-479, 2015 | 235 | 2015 |
| Structural reorganization of α-synuclein at low pH observed by NMR and REMD simulations KP Wu, DS Weinstock, C Narayanan, RM Levy, J Baum Journal of molecular biology 391 (4), 784-796, 2009 | 221 | 2009 |
| Temperature weighted histogram analysis method, replica exchange, and transition paths E Gallicchio, M Andrec, AK Felts, RM Levy The Journal of Physical Chemistry B 109 (14), 6722-6731, 2005 | 220 | 2005 |
| Effect of anisotropy and anharmonicity on protein crystallographic refinement: an evaluation by molecular dynamics J Kuriyan, GA Petsko, RM Levy, M Karplus Journal of molecular biology 190 (2), 227-254, 1986 | 207 | 1986 |
| Gaussian fluctuation formula for electrostatic free‐energy changes in solution RM Levy, M Belhadj, DB Kitchen The Journal of chemical physics 95 (5), 3627-3633, 1991 | 204 | 1991 |
| Diffusive Langevin dynamics of model alkanes RM Levy, M Karplus, JA McCammon Chemical Physics Letters 65 (1), 4-11, 1979 | 197 | 1979 |
| On finite‐size effects in computer simulations using the Ewald potential F Figueirido, GS Del Buono, RM Levy The Journal of chemical physics 103 (14), 6133-6142, 1995 | 192 | 1995 |