| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 16219 | 2019 |
| Gut microbiome pattern reflects healthy ageing and predicts survival in humans T Wilmanski, C Diener, N Rappaport, S Patwardhan, J Wiedrick, ... Nature metabolism 3 (2), 274-286, 2021 | 456 | 2021 |
| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 452* | 2020 |
| Use and abuse of correlation analyses in microbial ecology A Carr, C Diener, NS Baliga, SM Gibbons The ISME journal 13 (11), 2647-2655, 2019 | 219 | 2019 |
| MICOM: metagenome-scale modeling to infer metabolic interactions in the gut microbiota C Diener, SM Gibbons, O Resendis-Antonio MSystems 5 (1), 10.1128/msystems. 00606-19, 2020 | 173 | 2020 |
| Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers VL Hale, P Jeraldo, J Chen, M Mundy, J Yao, S Priya, G Keeney, K Lyke, ... Genome medicine 10, 1-13, 2018 | 117 | 2018 |
| Synthesis of multi-omic data and community metabolic models reveals insights into the role of hydrogen sulfide in colon cancer VL Hale, P Jeraldo, M Mundy, J Yao, G Keeney, N Scott, EH Cheek, ... Methods 149, 59-68, 2018 | 72 | 2018 |
| Genome–microbiome interplay provides insight into the determinants of the human blood metabolome C Diener, CL Dai, T Wilmanski, P Baloni, B Smith, N Rappaport, L Hood, ... Nature metabolism 4 (11), 1560-1572, 2022 | 61 | 2022 |
| Genomic and functional characterization of a mucosal symbiont involved in early-stage colorectal cancer MC Kordahi, IB Stanaway, M Avril, D Chac, MP Blanc, B Ross, C Diener, ... Cell host & microbe 29 (10), 1589-1598. e6, 2021 | 56 | 2021 |
| Cell penetrating peptides and cationic antibacterial peptides: two sides of the same coin JGR Plaza, R Morales-Nava, C Diener, G Schreiber, ZD Gonzalez, ... Journal of Biological Chemistry 289 (21), 14448-14457, 2014 | 55 | 2014 |
| Multiomic signatures of body mass index identify heterogeneous health phenotypes and responses to a lifestyle intervention K Watanabe, T Wilmanski, C Diener, JC Earls, A Zimmer, B Lincoln, ... Nature medicine 29 (4), 996-1008, 2023 | 51 | 2023 |
| Heterogeneity in statin responses explained by variation in the human gut microbiome T Wilmanski, SA Kornilov, C Diener, MP Conomos, JC Lovejoy, ... Med 3 (6), 388-405. e6, 2022 | 43 | 2022 |
| Onset of immune senescence defined by unbiased pyrosequencing of human immunoglobulin mRNA repertoires F Rubelt, V Sievert, F Knaust, C Diener, TS Lim, K Skriner, E Klipp, ... PloS one 7 (11), e49774, 2012 | 43 | 2012 |
| Effective design of multifunctional peptides by combining compatible functions C Diener, G Garza Ramos Martínez, D Moreno Blas, ... PLoS Computational Biology 12 (4), e1004786, 2016 | 42* | 2016 |
| From taxonomy to metabolic output: what factors define gut microbiome health? T Wilmanski, N Rappaport, C Diener, SM Gibbons, ND Price Gut microbes 13 (1), 1907270, 2021 | 36 | 2021 |
| Yeast mating and image-based quantification of spatial pattern formation C Diener, G Schreiber, W Giese, G del Rio, A Schröder, E Klipp PLoS computational biology 10 (6), e1003690, 2014 | 35 | 2014 |
| Progressive shifts in the gut microbiome reflect prediabetes and diabetes development in a treatment-naive Mexican cohort C Diener, ML Reyes-Escogido, LM Jimenez-Ceja, M Matus, ... Frontiers in endocrinology 11, 602326, 2021 | 31 | 2021 |
| Lettuce (Lactuca sativa) productivity influenced by microbial inocula under nitrogen-limited conditions in aquaponics JA Day, C Diener, AE Otwell, KE Tams, B Bebout, AM Detweiler, MD Lee, ... PLoS One 16 (2), e0247534, 2021 | 28* | 2021 |
| Baseline gut metagenomic functional gene signature associated with variable weight loss responses following a healthy lifestyle intervention in humans C Diener, S Qin, Y Zhou, S Patwardhan, L Tang, JC Lovejoy, AT Magis, ... Msystems 6 (5), 10.1128/msystems. 00964-21, 2021 | 26 | 2021 |
| Antimicrobial Peptide against Mycobacterium Tuberculosis That Activates Autophagy Is an Effective Treatment for Tuberculosis EA Peláez Coyotl, J Barrios Palacios, G Muciño, D Moreno-Blas, ... Pharmaceutics 12 (11), 1071, 2020 | 26 | 2020 |
Sean M. GibbonsAssociate Professor, Institute for Systems BiologyVerified email at isbscience.org
