| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 18882 | 2019 |
| A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses RT Jones, MS Robeson, CL Lauber, M Hamady, R Knight, N Fierer The ISME journal 3 (4), 442-453, 2009 | 1258 | 2009 |
| Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil N Fierer, M Breitbart, J Nulton, P Salamon, C Lozupone, R Jones, ... Applied and environmental microbiology 73 (21), 7059-7066, 2007 | 659 | 2007 |
| RESCRIPt: Reproducible sequence taxonomy reference database management MS Robeson, DR O’Rourke, BD Kaehler, M Ziemski, MR Dillon, JT Foster, ... PLoS computational biology 17 (11), e1009581, 2021 | 648 | 2021 |
| Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants G Bonito, H Reynolds, MS Robeson, J Nelson, BP Hodkinson, G Tuskan, ... Molecular Ecology 23 (13), 3356-3370, 2014 | 318 | 2014 |
| PyCogent: a toolkit for making sense from sequence R Knight, P Maxwell, A Birmingham, J Carnes, JG Caporaso, BC Easton, ... Genome biology 8, 1-16, 2007 | 236 | 2007 |
| Multi-omics data integration considerations and study design for biological systems and disease S Graw, K Chappell, CL Washam, A Gies, J Bird, MS Robeson, SD Byrum Molecular omics 17 (2), 170-185, 2021 | 173 | 2021 |
| Global distribution of Polaromonas phylotypes-evidence for a highly successful dispersal capacity JL Darcy, RC Lynch, AJ King, MS Robeson, SK Schmidt PLoS One 6 (8), e23742, 2011 | 168 | 2011 |
| Seasonal Shifts in Diet and Gut Microbiota of the American Bison (Bison bison). GT Bergmann, JM Craine, MS Robeson, N Fierer PloS one 10 (11), e0142409, 2015 | 138 | 2015 |
| Characterizing microbial communities through space and time A Gonzalez, A King, MS Robeson II, S Song, A Shade, JL Metcalf, ... Current Opinion in Biotechnology 23 (3), 431-436, 2012 | 132 | 2012 |
| Soil CO2 flux and photoautotrophic community composition in high‐elevation, ‘barren’ soil KR Freeman, MY Pescador, SC Reed, EK Costello, MS Robeson, ... Environmental microbiology 11 (3), 674-686, 2009 | 112 | 2009 |
| Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups K Abram, Z Udaondo, C Bleker, V Wanchai, TM Wassenaar, MS Robeson, ... Communications Biology 4 (1), 117, 2021 | 107* | 2021 |
| Functional shifts in unvegetated, perhumid, recently-deglaciated soils do not correlate with shifts in soil bacterial community composition SR Sattin, CC Cleveland, E Hood, SC Reed, AJ King, SK Schmidt, ... The Journal of Microbiology 47, 673-681, 2009 | 107 | 2009 |
| Microbial community composition and diversity in Caspian Sea sediments N Mahmoudi, MS Robeson II, HF Castro, JL Fortney, SM Techtmann, ... FEMS Microbiology Ecology 1 (91), 1-11, 2015 | 96 | 2015 |
| Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig (Sus scrofa) MS Robeson, K Khanipov, G Golovko, SM Wisely, MD White, ... Ecology and Evolution 8 (1), 185-196, 2018 | 92 | 2018 |
| Contrasting taxonomic stratification of microbial communities in two hypersaline meromictic lakes AŞ Andrei, MS Robeson II, A Baricz, C Coman, V Muntean, A Ionescu, ... ISME, 2015 | 92 | 2015 |
| Phylogeography of microbial phototrophs in the dry valleys of the high Himalayas and Antarctica SK Schmidt, RC Lynch, AJ King, D Karki, MS Robeson, L Nagy, ... Proceedings of the Royal Society B: Biological Sciences 278 (1706), 702, 2011 | 89 | 2011 |
| Soil rotifer communities are extremely diverse globally but spatially autocorrelated locally MS Robeson, AJ King, KR Freeman, CW Birky Jr, AP Martin, SK Schmidt Proceedings of the National Academy of Sciences 108 (11), 4406-4410, 2011 | 85 | 2011 |
| Insights and inferences about integron evolution from genomic data DR Nemergut, MS Robeson, RF Kysela, AP Martin, SK Schmidt, R Knight BMC genomics 9, 1-12, 2008 | 83 | 2008 |
| Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment CM Timm, AG Campbell, SM Utturkar, SR Jun, RE Parales, WA Tan, ... Frontiers in microbiology 6, 1118, 2015 | 75 | 2015 |
S K SchmidtProfessor of Biology, University of Colorado, BoulderVerified email at colorado.eduRob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerified email at ucsd.edu
Noah FiererProfessor, University of Colorado at BoulderVerified email at colorado.edu
Dave UsseryProfessor, Department of BioMedical Informatics, UAMSVerified email at uams.edu
Catherine LozuponeAssociate Professor of Medicine, University of Colorado, DenverVerified email at ucdenver.edu
Christopher W. SchadtOak Ridge National Laboratory / University of TennesseeVerified email at ornl.gov
Nicholas BokulichETH ZürichVerified email at ethz.ch
Ryan Thomas JonesDirector of Latin America ProgramsVerified email at email.arizona.edu
Michał ZiemskiResearch Software Engineer, ETH ZürichVerified email at hest.ethz.ch
Mircea PodarOak Ridge National Laboratory and The University of Tennessee KnoxvilleVerified email at ornl.gov
John L. DarcyPost-doctoral fellow at University of Colorado Anschutz Medical CampusVerified email at colorado.edu
Se-Ran JunUniversity of Arkansas for Medical SciencesVerified email at uams.edu
Devon O'RourkeVerified email at outermostlab.com
Rytas VilgalysDuke UniversityVerified email at duke.edu
Christian L LauberNationwide Children's HospitalVerified email at nationwidechildrens.org
Ryan C. LynchPlant Biology, Salk InstituteVerified email at colorado.edu
Cristian ComanInstitute of Biological Research, Cluj-NapocaVerified email at icbcluj.ro
Horia BanciuBabeș-Bolyai University and Centre for Systems Biology, Biodiversity and Bioresources "3B"Verified email at ubbcluj.ro