Alfonso Valencia

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Martin Krallinger*Head of Natural Language Processing for Biomedical Information Analysis (NLP4BIA), BarcelonaVerified email at bsc.es
David JuanSpanish National Centre for BiotechnologyVerified email at cnb.csic.es
Chris SanderHarvard Medical School, Broad Institute, Dana-Farber Cancer Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Florian LeitnerData Catalytics, ION Analytics, IE UniversityVerified email at datacatalytics.com
Christos Α. OuzounisAUTH, Thessalonica, Greece • CERTH, Thessalonica, GreeceVerified email at csd.auth.gr
Luis Sanchez-PulidoCentro de Astrobiología (CAB), CSIC-INTAVerified email at cab.inta-csic.es
Iakes EzkurdiaSpanish National Cardiovascular Research Center CNICVerified email at cnic.es
Ana M Rojas-Mendoza (0000-0003-07...Centro Andaluz de Biología del Desarrollo (CABD-CSIC) RoR:01v5e3436Verified email at upo.es
Miguel VazquezBarcelona Supercomputing Center - Spanish National HPCVerified email at bsc.es
Miguel AndradeJohannes-Gutenberg University in MainzVerified email at uni-mainz.de
Vera PancaldiCancer Research Centre of ToulouseVerified email at inserm.fr
ENRIQUE CARRILLO DE SANTA PAU...IMDEA Food Institute (ROR 04g4ezh90). Madrid. SPAINVerified email at imdea.org
Daniel RicoCABIMERVerified email at cabimer.es
Tabares-Seisdedos, Rafael (ORCID: 0...University of Valencia (ROR: 043nxc105) - CIBERSAM (ROR: 009byq155) - INCLIVA (ROR: 059wbyv33)Verified email at uv.es
Tirso Pons (ORCID:0000-0002-7616-7...CNB-CSIC (RoR:015w4v032), MadridVerified email at cnb.csic.es
Peer BorkDirector of EMBL HeidelbergVerified email at embl.de
Federico AbascalCancer, Aging and Somatic Mutation, Wellcome Sanger InstituteVerified email at sanger.ac.uk
Anaïs BaudotCNRS - INSERM - Aix*Marseille UniversitéVerified email at univ-amu.fr
Burkhard RostProfessor of Computer ScienceVerified email at tum.de
Obdulia RabalCIMA - University of NavarraVerified email at unav.es

Alfonso Valencia

ICREA Professor. Barcelona Supercomputing Center.

Verified email at bsc.es - Homepage

computational biology bioinformatics cancer genomics text mining protein evolution.


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012	17200	2012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007	6098	2007
GENCODE: the reference human genome annotation for The ENCODE Project J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ... Genome research 22 (9), 1760-1774, 2012	5362	2012
Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020	1958*	2020
Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia XS Puente, M Pinyol, V Quesada, L Conde, GR Ordóñez, N Villamor, ... Nature 475 (7354), 101-105, 2011	1928	2011
Expanded encyclopaedias of DNA elements in the human and mouse genomes Nature 583, 699–710, 2020	1574	2020
A user's guide to the encyclopedia of DNA elements (ENCODE) RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ... PLoS Biology 9 (4), e1001046, 2011	1481	2011
Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia V Quesada, L Conde, N Villamor, GR Ordóñez, P Jares, L Bassaganyas, ... Nature genetics 44 (1), 47-52, 2012	1274	2012
The allelic landscape of human blood cell trait variation and links to common complex disease WJ Astle, H Elding, T Jiang, D Allen, D Ruklisa, AL Mann, D Mead, ... Cell 167 (5), 1415-1429. e19, 2016	1252	2016
IntAct: an open source molecular interaction database H Hermjakob, L Montecchi‐Palazzi, C Lewington, S Mudali, S Kerrien, ... Nucleic acids research 32 (suppl_1), D452-D455, 2004	1204	2004
Correlated mutations and residue contacts in proteins U Göbel, C Sander, R Schneider, A Valencia Proteins: Structure, Function, and Bioinformatics 18 (4), 309-317, 1994	1095	1994
An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins. P Bork, C Sander, A Valencia Proceedings of the National Academy of Sciences 89 (16), 7290-7294, 1992	1080	1992
Non-coding recurrent mutations in chronic lymphocytic leukaemia XS Puente, S Beà, R Valdés-Mas, N Villamor, J Gutiérrez-Abril, ... Nature 526 (7574), 519-524, 2015	1046	2015
Distinct DNA methylomes of newborns and centenarians H Heyn, N Li, HJ Ferreira, S Moran, DG Pisano, A Gomez, J Diez, ... Proceedings of the National Academy of Sciences 109 (26), 10522-10527, 2012	911	2012
A hierarchical unsupervised growing neural network for clustering gene expression patterns J Herrero, A Valencia, J Dopazo Bioinformatics 17 (2), 126-136, 2001	817	2001
Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes I Ezkurdia, D Juan, JM Rodriguez, A Frankish, M Diekhans, J Harrow, ... Human molecular genetics 23 (22), 5866-5878, 2014	791	2014
The ras protein family: evolutionary tree and role of conserved amino acids A Valencia, P Chardin, A Wittinghofer, C Sander Biochemistry 30 (19), 4637-4648, 1991	770	1991
Genetic drivers of epigenetic and transcriptional variation in human immune cells L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ... Cell 167 (5), 1398-1414. e24, 2016	699	2016
Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia M Kulis, S Heath, M Bibikova, AC Queirós, A Navarro, G Clot, ... Nature genetics 44 (11), 1236-1242, 2012	680	2012
Correlated mutations contain information about protein-protein interaction F Pazos, M Helmer-Citterich, G Ausiello, A Valencia Journal of molecular biology 271 (4), 511-523, 1997	680	1997

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