| Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences MF Berger, G Badis, AR Gehrke, S Talukder, AA Philippakis, ... Cell 133 (7), 1266-1276, 2008 | 721 | 2008 |
| Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins D Ray, H Kazan, ET Chan, LP Castillo, S Chaudhry, S Talukder, ... Nature biotechnology 27 (7), 667-670, 2009 | 544 | 2009 |
| A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters G Badis, ET Chan, H van Bakel, L Pena-Castillo, D Tillo, K Tsui, ... Molecular cell 32 (6), 878-887, 2008 | 536 | 2008 |
| A critical assessment of Mus musculusgene function prediction using integrated genomic evidence L Peña-Castillo, M Tasan, CL Myers, H Lee, T Joshi, C Zhang, Y Guan, ... Genome biology 9, 1-19, 2008 | 298 | 2008 |
| Why are there still over 1000 uncharacterized yeast genes? L Pena-Castillo, TR Hughes Genetics 176 (1), 7-14, 2007 | 201 | 2007 |
| Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays MB Stead, S Marshburn, BK Mohanty, J Mitra, LP Castillo, D Ray, ... Nucleic acids research 39 (8), 3188-3203, 2011 | 145 | 2011 |
| Parasite burden and CD36-mediated sequestration are determinants of acute lung injury in an experimental malaria model FE Lovegrove, SA Gharib, L Peña-Castillo, SN Patel, JT Ruzinski, ... PLoS pathogens 4 (5), e1000068, 2008 | 131 | 2008 |
| A survey of essential gene function in the yeast cell division cycle L Yu, LP Castillo, S Mnaimneh, TR Hughes, GW Brown Molecular biology of the cell 17 (11), 4736-4747, 2006 | 128 | 2006 |
| Using probabilistic knowledge and simulation to play poker D Billings, J Schaeffer, D Szafron In AAAI National Conference, 1999 | 125 | 1999 |
| Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression J Fillingham, P Kainth, JP Lambert, H van Bakel, K Tsui, L Peña-Castillo, ... Molecular cell 35 (3), 340-351, 2009 | 111 | 2009 |
| Simultaneous host and parasite expression profiling identifies tissue-specific transcriptional programs associated with susceptibility or resistance to experimental cerebral … FE Lovegrove, L Peña-Castillo, N Mohammad, WC Liles, TR Hughes, ... BMC genomics 7, 1-17, 2006 | 87 | 2006 |
| Comprehensive genetic analysis of transcription factor pathways using a dual reporter gene system in budding yeast P Kainth, HE Sassi, L Peña-Castillo, G Chua, TR Hughes, B Andrews Methods 48 (3), 258-264, 2009 | 43 | 2009 |
| Detecting ulcerative colitis from colon samples using efficient feature selection and machine learning HM Khorasani, H Usefi, L Peña-Castillo Scientific reports 10 (1), 13744, 2020 | 42 | 2020 |
| Predicting the binding preference of transcription factors to individual DNA k-mers TM Alleyne, L Peña-Castillo, G Badis, S Talukder, MF Berger, AR Gehrke, ... Bioinformatics 25 (8), 1012-1018, 2009 | 41 | 2009 |
| Learning to play strong poker J Schaeffer, D Billings, L Peña, D Szafron The International Conference on Machine Learning Workshop on Game Playing, 1999 | 39* | 1999 |
| A window to your smartphone: exploring interaction and communication in immersive vr with augmented virtuality AP Desai, L Pena-Castillo, O Meruvia-Pastor 2017 14th conference on computer and robot vision (CRV), 217-224, 2017 | 38 | 2017 |
| Learning minesweeper with multirelational learning LP Castillo, S Wrobel INTERNATIONAL JOINT CONFERENCE ON ARTIFICIAL INTELLIGENCE 18, 533-540, 2003 | 33 | 2003 |
| A user study on augmented virtuality using depth sensing cameras for near-range awareness in immersive vr G Alaee, AP Deasi, L Pena-Castillo, E Brown, O Meruvia-Pastor IEEE VR’s 4th workshop on everyday virtual reality (WEVR 2018) 10, 3, 2018 | 32 | 2018 |
| Promotech: a general tool for bacterial promoter recognition R Chevez-Guardado, L Peña-Castillo Genome Biology 22, 1-16, 2021 | 30 | 2021 |
| Using selectivesampling simulations in poker D Billings, D Papp, L Peña, J Schaeffer, D Szafron American Association of Artificial Intelligence Spring Symposium on Search …, 1999 | 29 | 1999 |
Timothy R. HughesUniversity of TorontoVerified email at utoronto.ca
