Osbaldo Resendis-Antonio

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Sergio Encarnación Investigador Titular, Centro de Ciencias Genómicas, UNAMVerified email at ccg.unam.mx
Julio Collado-VidesProfessor of Computational Genomics, CCG, UNAMVerified email at ccg.unam.mx
Christian DienerAssistant Professor, Medical University of Graz, AustriaVerified email at medunigraz.at
Agustino Martínez AntonioCinvestav IrapuatoVerified email at cinvestav.mx
Rosa-Maria Gutierrez-RiosInvestigador IBT UNAMVerified email at ibt.unam.mx
Julio Augusto Freyre-González (orcid....Head of the Regulatory Systems Biology Research Group, Center for Genomic Sciences, UNAM, MexicoVerified email at ccg.unam.mx
Vanessa L. HaleOhio State UniversityVerified email at osu.edu
Nicholas ChiaData Science and LearningVerified email at anl.gov
Patricio JeraldoRing TherapeuticsVerified email at ringtx.com
Maximino AldanaInstituto de Ciencias Fisicas, Universidad Nacional Autónoma de MéxicoVerified email at icf.unam.mx
Ricardo Menchaca-MendezCIC - Instituto Politécnico NacionalVerified email at cic.ipn.mx
Yalbi Itzel Balderas-MartínezInstituto Nacional de Enfermedades Respiratorias Ismael Cosío VillegasVerified email at iner.gob.mx
Ruben FossionPhysicist and Researcher in Complexity Science, National Autonomous University of MexicoVerified email at nucleares.unam.mx
Claudia Erika Hernandez PatiñoINMEGENVerified email at lcg.unam.mx
Gustavo Jaime-MuñozUniversidad Nacional Autonoma de MéxicoVerified email at inmegen.edu.mx
Guillermo GossetScientist, Universidad Nacional Autónoma de MéxicoVerified email at ibt.unam.mx
Milton SaierProfessor of Molecular Biology, UC San DiegoVerified email at ucsd.edu
Ali Salehzadeh-YazdiComputational Biologist, Constructor UniversityVerified email at constructor.university
Juan Carlos Higareda-AlmarazComputational biologistVerified email at universaldx.com
Alejandra V. ContrerasNational Institute of Genomic Medice/Fox Chase Cancer Center/MerckVerified email at merck.com

Osbaldo Resendis-Antonio

UNAM-INMEGEN

Verified email at inmegen.gob.mx - Homepage

Systems Biology in Cancer Metabolism/ Metabolism in microbiome


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MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020	399	2020
Robustness and evolvability in genetic regulatory networks M Aldana, E Balleza, S Kauffman, O Resendiz Journal of theoretical biology 245 (3), 433-448, 2007	352	2007
Regulation by transcription factors in bacteria: beyond description E Balleza, LN Lopez-Bojorquez, A Martínez-Antonio, O Resendis-Antonio, ... FEMS microbiology reviews 33 (1), 133-151, 2008	258	2008
MICOM: metagenome-scale modeling to infer metabolic interactions in the gut microbiota C Diener, SM Gibbons, O Resendis-Antonio MSystems 5 (1), 10.1128/msystems. 00606-19, 2020	173	2020
Hierarchical agglomerative clustering ML Zepeda-Mendoza, O Resendis-Antonio Encyclopedia of systems biology 43 (1), 886-887, 2013	137	2013
Modular analysis of the transcriptional regulatory network of E. coli O Resendis-Antonio, JA Freyre-Gonzalez, R Menchaca-Mendez, ... TRENDS in Genetics 21 (1), 16-20, 2005	128	2005
Distinct Microbes, Metabolites, and Ecologies Define the Microbiome in Deficient and Proficient Mismatch Repair Colorectal Cancers VL Hale, P Jeraldo, J Chen, M Mundy, J Yao, S Priya, G Keeney, K Lyke, ... bioRxiv, 346510, 2018	117	2018
Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli O Resendis-Antonio, JL Reed, S Encarnación, J Collado-Vides, ... PLoS computational biology 3 (10), e192, 2007	117	2007
Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli RM Gutierrez-Ríos, JA Freyre-Gonzalez, O Resendis, J Collado-Vides, ... BMC microbiology 7, 1-18, 2007	90	2007
Modeling core metabolism in cancer cells: surveying the topology underlying the Warburg effect O Resendis-Antonio, A Checa, S Encarnación PloS one 5 (8), e12383, 2010	87	2010
Evolution of centrality measurements for the detection of essential proteins in biological networks M Jalili, A Salehzadeh-Yazdi, S Gupta, O Wolkenhauer, M Yaghmaie, ... Frontiers in physiology 7, 375, 2016	86	2016
Quantitative proteomic analysis of extracellular vesicle subgroups isolated by an optimized method combining polymer‐based precipitation and size exclusion chromatography JA Martínez‐Greene, K Hernández‐Ortega, R Quiroz‐Baez, ... Journal of extracellular vesicles 10 (6), e12087, 2021	76	2021
Synthesis of multi-omic data and community metabolic models reveals insights into the role of hydrogen sulfide in colon cancer VL Hale, P Jeraldo, M Mundy, J Yao, G Keeney, N Scott, EH Cheek, ... Methods 149, 59-68, 2018	72	2018
Proteomic patterns of cervical cancer cell lines, a network perspective JC Higareda-Almaraz, MR Enríquez-Gasca, M Hernández-Ortiz, ... BMC systems biology 5, 1-16, 2011	64	2011
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... BioRxiv, 350991, 2018	60	2018
Systems biology of bacterial nitrogen fixation: high-throughput technology and its integrative description with constraint-based modeling O Resendis-Antonio, M Hernández, E Salazar, S Contreras, GM Batallar, ... BMC Systems Biology 5, 1-15, 2011	53	2011
Host-microbiome interaction and cancer: potential application in precision medicine AV Contreras, B Cocom-Chan, G Hernandez-Montes, T Portillo-Bobadilla, ... Frontiers in physiology 7, 606, 2016	50	2016
Unveiling functional heterogeneity in breast cancer multicellular tumor spheroids through single-cell RNA-seq EA Muciño-Olmos, A Vázquez-Jiménez, U Avila-Ponce de León, ... Scientific reports 10 (1), 12728, 2020	39	2020
Functional modules, structural topology, and optimal activity in metabolic networks O Resendis-Antonio, M Hernández, Y Mora, S Encarnación Public Library of Science 8 (10), e1002720, 2012	39	2012
Transcriptional and microenvironmental landscape of macrophage transition in cancer: A boolean analysis U Avila-Ponce de León, A Vázquez-Jiménez, M Matadamas-Guzman, ... Frontiers in Immunology 12, 642842, 2021	35	2021

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