| Comparative protein structure modeling of genes and genomes MA Martí-Renom, AC Stuart, A Fiser, R Sánchez, F Melo, A Šali Annual review of biophysics and biomolecular structure 29 (1), 291-325, 2000 | 4035 | 2000 |
| Vanilloid receptor–related osmotically activated channel (VR-OAC), a candidate vertebrate osmoreceptor W Liedtke, Y Choe, MA Martí-Renom, AM Bell, CS Denis, AJ Hudspeth, ... Cell 103 (3), 525-535, 2000 | 1605 | 2000 |
| Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data J Dekker, MA Marti-Renom, LA Mirny Nature Reviews Genetics 14 (6), 390-403, 2013 | 1223 | 2013 |
| modbase, a database of annotated comparative protein structure models and associated resources U Pieper, N Eswar, BM Webb, D Eramian, L Kelly, DT Barkan, H Carter, ... Nucleic acids research 37 (suppl_1), D347-D354, 2009 | 859 | 2009 |
| Tools for comparative protein structure modeling and analysis N Eswar, B John, N Mirkovic, A Fiser, VA Ilyin, U Pieper, AC Stuart, ... Nucleic acids research 31 (13), 3375-3380, 2003 | 593 | 2003 |
| Protein structure modeling with MODELLER B Webb, A Sali Functional Genomics, 39-54, 2017 | 463 | 2017 |
| Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation F Le Dily, D Bau, A Pohl, GP Vicent, F Serra, D Soronellas, G Castellano, ... Genes & development 28 (19), 2151-2162, 2014 | 348 | 2014 |
| The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules D Baù, A Sanyal, BR Lajoie, E Capriotti, M Byron, JB Lawrence, J Dekker, ... Nature structural & molecular biology 18 (1), 107-114, 2011 | 346 | 2011 |
| Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming R Stadhouders, E Vidal, F Serra, B Di Stefano, F Le Dily, J Quilez, ... Nature genetics 50 (2), 238-249, 2018 | 345 | 2018 |
| The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation MA Umbarger, E Toro, MA Wright, GJ Porreca, D Bau, SH Hong, MJ Fero, ... Molecular cell 44 (2), 252-264, 2011 | 304 | 2011 |
| Protein structure modeling for structural genomics R Sánchez, U Pieper, F Melo, N Eswar, MA Martí-Renom, ... nature structural biology 7 (11), 986-990, 2000 | 304 | 2000 |
| Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors F Serra, D Baù, M Goodstadt, D Castillo, GJ Filion, MA Marti-Renom PLoS computational biology 13 (7), e1005665, 2017 | 294 | 2017 |
| Whole-Genome Sequencing for Rapid Susceptibility Testing of M. tuberculosis CU Köser, JM Bryant, J Becq, ME Török, MJ Ellington, MA Marti-Renom, ... New England journal of medicine 369 (3), 290-292, 2013 | 272 | 2013 |
| Human pancreatic islet three-dimensional chromatin architecture provides insights into the genetics of type 2 diabetes I Miguel-Escalada, S Bonàs-Guarch, I Cebola, J Ponsa-Cobas, ... Nature genetics 51 (7), 1137-1148, 2019 | 260 | 2019 |
| Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling G Nir, I Farabella, C Pérez Estrada, CG Ebeling, BJ Beliveau, HM Sasaki, ... PLoS genetics 14 (12), e1007872, 2018 | 250 | 2018 |
| Alignment of protein sequences by their profiles MA Marti‐Renom, MS Madhusudhan, A Sali Protein Science 13 (4), 1071-1087, 2004 | 250 | 2004 |
| EVA: continuous automatic evaluation of protein structure prediction servers VA Eyrich, MA Martı-Renom, D Przybylski, MS Madhusudhan, A Fiser, ... Bioinformatics 17 (12), 1242-1243, 2001 | 242 | 2001 |
| EVA: evaluation of protein structure prediction servers IYY Koh, VA Eyrich, MA Marti-Renom, D Przybylski, MS Madhusudhan, ... Nucleic Acids Research 31 (13), 3311-3315, 2003 | 219 | 2003 |
| A composite score for predicting errors in protein structure models D Eramian, M Shen, D Devos, F Melo, A Sali, MA Marti‐Renom Protein science 15 (7), 1653-1666, 2006 | 201 | 2006 |
| The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia R Beekman, V Chapaprieta, N Russiñol, R Vilarrasa-Blasi, ... Nature medicine 24 (6), 868-880, 2018 | 196 | 2018 |
Andrej SaliUniversity of California, San FranciscoVerified email at salilab.org