| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007 | 6101 | 2007 |
| Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma SI Nikolaev, D Rimoldi, C Iseli, A Valsesia, D Robyr, C Gehrig, ... Nature genetics 44 (2), 133-139, 2012 | 496 | 2012 |
| Genomic analysis identifies new drivers and progression pathways in skin basal cell carcinoma X Bonilla, L Parmentier, B King, F Bezrukov, G Kaya, V Zoete, ... Nature genetics 48 (4), 398-406, 2016 | 492 | 2016 |
| Phylogenomics reshuffles the eukaryotic supergroups F Burki, K Shalchian-Tabrizi, M Minge, Å Skjæveland, SI Nikolaev, ... PloS one 2 (8), e790, 2007 | 482 | 2007 |
| Somatic Activating KRAS Mutations in Arteriovenous Malformations of the Brain SI Nikolaev, S Vetiska, X Bonilla, E Boudreau, S Jauhiainen, ... New England Journal of Medicine 378 (3), 250-261, 2018 | 435 | 2018 |
| Association of checkpoint inhibitor–induced toxic effects with shared cancer and tissue antigens in non–small cell lung cancer F Berner, D Bomze, S Diem, OH Ali, M Fässler, S Ring, R Niederer, ... JAMA oncology 5 (7), 1043-1047, 2019 | 348 | 2019 |
| The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes SI Nikolaev, C Berney, JF Fahrni, I Bolivar, S Polet, AP Mylnikov, ... Proceedings of the National Academy of Sciences 101 (21), 8066-8071, 2004 | 294 | 2004 |
| Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome EH Margulies, GM Cooper, G Asimenos, DJ Thomas, CN Dewey, A Siepel, ... Genome research 17 (6), 760-774, 2007 | 252 | 2007 |
| APOBEC-induced mutations in human cancers are strongly enriched on the lagging DNA strand during replication VB Seplyarskiy, RA Soldatov, KY Popadin, SE Antonarakis, GA Bazykin, ... Genome research 26 (2), 174-182, 2016 | 198 | 2016 |
| Deep phylogeny and evolution of slime moulds (Mycetozoa) AM Fiore-Donno, SI Nikolaev, M Nelson, J Pawlowski, T Cavalier-Smith, ... Protist 161 (1), 55-70, 2010 | 191 | 2010 |
| Phylogeny of novel naked filose and reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea revised D Bass, EEY Chao, S Nikolaev, A Yabuki, K Ishida, C Berney, U Pakzad, ... Protist 160 (1), 75-109, 2009 | 187 | 2009 |
| Responsiveness to anti-PD-1 and anti-CTLA-4 immune checkpoint blockade in SB28 and GL261 mouse glioma models V Genoud, E Marinari, SI Nikolaev, JC Castle, V Bukur, PY Dietrich, ... Oncoimmunology 7 (12), e1501137, 2018 | 145 | 2018 |
| Early history of mammals is elucidated with the ENCODE multiple species sequencing data S Nikolaev, JI Montoya-Burgos, EH Margulies, NCS Program, ... PLoS genetics 3 (1), e2, 2007 | 127 | 2007 |
| The testate lobose amoebae (order Arcellinida Kent, 1880) finally find their home within Amoebozoa SI Nikolaev, EAD Mitchell, NB Petrov, C Berney, J Fahrni, J Pawlowski Protist 156 (2), 191-202, 2005 | 124 | 2005 |
| Circulating tumoral DNA: Preanalytical validation and quality control in a diagnostic laboratory S Nikolaev, L Lemmens, T Koessler, JL Blouin, T Nouspikel Analytical biochemistry 542, 34-39, 2018 | 109 | 2018 |
| Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements SI Nikolaev, JI Montoya-Burgos, K Popadin, L Parand, EH Margulies, ... Proceedings of the National Academy of Sciences 104 (51), 20443-20448, 2007 | 108 | 2007 |
| Extrachromosomal driver mutations in glioblastoma and low-grade glioma S Nikolaev, F Santoni, M Garieri, P Makrythanasis, E Falconnet, ... Nature communications 5 (1), 5690, 2014 | 96 | 2014 |
| Exome sequencing identifies putative drivers of progression of transient myeloproliferative disorder to AMKL in infants with Down syndrome SI Nikolaev, F Santoni, A Vannier, E Falconnet, E Giarin, G Basso, ... Blood, The Journal of the American Society of Hematology 122 (4), 554-561, 2013 | 87 | 2013 |
| A single-nucleotide substitution mutator phenotype revealed by exome sequencing of human colon adenomas SI Nikolaev, SK Sotiriou, IS Pateras, F Santoni, S Sougioultzis, H Edgren, ... Cancer research 72 (23), 6279-6289, 2012 | 74 | 2012 |
| RAS mutations drive proliferative chronic myelomonocytic leukemia via a KMT2A-PLK1 axis RM Carr, D Vorobyev, T Lasho, DL Marks, EJ Tolosa, A Vedder, ... Nature communications 12 (1), 2901, 2021 | 69 | 2021 |