Simon Anders

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Citations	126779	99358
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Wolfgang HuberEMBL - European Molecular Biology LaboratoryVerified email at embl.org
Michael I. LoveAssociate Professor, Biostatistics & Genetics, UNC-Chapel HillVerified email at email.unc.edu
Paul Theodor PylDepartment of Laboratory Medicine, National Bioinformatics Infrastructure Sweden, Science for LifeVerified email at scilifelab.se
Alejandro ReyesNovartis BioMedical Research - Discovery Sciences Data ScienceVerified email at novartis.com
Ana Martin-VillalbaGerman Cancer Research Center (DKFZ)Verified email at dkfz.de
Gordon K SmythDivision Head, Bioinformatics, Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Lukas PM KremerDKFZ & BioQuant HeidelbergVerified email at dkfz.de
Michael KnopUniversity of HeidelbergVerified email at zmbh.uni-heidelberg.de
Konrad HerbstHeidelberg UniversityVerified email at zmbh.uni-heidelberg.de
Anna Marciniak-CzochraPofessor of Mathematics, Heidelberg UniversityVerified email at iwr.uni-heidelberg.de
Vladimir BenesEMBLVerified email at embl.de
Hans-Georg KräusslichVerified email at med.uni-heidelberg.de
Kathleen BörnerMANAGING DIRECTOR AskBio GmbHVerified email at askbio.com
Sarah A. TeichmannUniversity of CambridgeVerified email at cam.ac.uk
Aleksandra A KolodziejczykInternational Institute of Molecular and Cell BiologyVerified email at iimcb.gov.pl
John MarioniGenentechVerified email at gene.com
Valentina ProserpioUniversity of TurinVerified email at unito.it
Marcus G HeislerUniversity of SydneyVerified email at sydney.edu.au
Hans J BriegelProfessor of Theoretical Physics, University of InnsbruckVerified email at uibk.ac.at
Petr ChlandaHeidelberg UniversityVerified email at bioquant.uni-heidelberg.de

Simon Anders

Bioquant Center, University of Heidelberg

Verified email at fs.tum.de - Homepage

biostatistics high-throughput sequencing quantum information


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 MI Love, W Huber, S Anders Genome biology 15, 1-21, 2014	72510	2014
HTSeq—a Python framework to work with high-throughput sequencing data S Anders, PT Pyl, W Huber bioinformatics 31 (2), 166-169, 2015	20136	2015
Differential expression analysis for sequence count data S Anders, W Huber Genome Biology 11, R106, 2010	17259	2010
Orchestrating high-throughput genomic analysis with Bioconductor W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ... Nature methods 12 (2), 115-121, 2015	3608	2015
Detecting differential usage of exons from RNA-seq data S Anders, A Reyes, W Huber Nature Precedings, 1-1, 2012	1779	2012
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor S Anders, DJ McCarthy, Y Chen, M Okoniewski, GK Smyth, W Huber, ... Nature protocols 8 (9), 1765-1786, 2013	1327	2013
Accounting for technical noise in single-cell RNA-seq experiments P Brennecke, S Anders, JK Kim, AA Kołodziejczyk, X Zhang, V Proserpio, ... Nature methods 10 (11), 1093-1095, 2013	1067	2013
Differential analysis of count data–the DESeq2 package M Love, S Anders, W Huber Genome Biol 15 (550), 10-1186, 2014	829	2014
Differential expression of RNA-Seq data at the gene level–the DESeq package S Anders, W Huber Heidelberg, Germany: European Molecular Biology Laboratory (EMBL) 10 …, 2012	793	2012
A colorimetric RT-LAMP assay and LAMP-sequencing for detecting SARS-CoV-2 RNA in clinical samples VL Dao Thi, K Herbst, K Boerner, M Meurer, LPM Kremer, D Kirrmaier, ... Science translational medicine 12 (556), eabc7075, 2020	703	2020
Gene expression across mammalian organ development M Cardoso-Moreira, J Halbert, D Valloton, B Velten, C Chen, Y Shao, ... Nature 571 (7766), 505-509, 2019	609	2019
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data M Morgan, S Anders, M Lawrence, P Aboyoun, H Pagès, R Gentleman Bioinformatics 25 (19), 2607-2608, 2009	603	2009
Analysing high-throughput sequencing data in Python with HTSeq 2.0 GH Putri, S Anders, PT Pyl, JE Pimanda, F Zanini Bioinformatics 38 (10), 2943-2945, 2022	526	2022
Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements K Zarnack, J König, M Tajnik, I Martincorena, S Eustermann, I Stévant, ... Cell 152 (3), 453-466, 2013	502	2013
RNA-Seq workflow: gene-level exploratory analysis and differential expression MI Love, S Anders, V Kim, W Huber F1000Research 4, 2015	425	2015
Quiescence modulates stem cell maintenance and regenerative capacity in the aging brain G Kalamakis, D Brüne, S Ravichandran, J Bolz, W Fan, F Ziebell, T Stiehl, ... Cell 176 (6), 1407-1419. e14, 2019	343	2019
Fast simulation of stabilizer circuits using a graph-state representation S Anders, HJ Briegel Physical Review A—Atomic, Molecular, and Optical Physics 73 (2), 022334, 2006	209	2006
Analysing RNA-Seq data with the DESeq package S Anders Mol Biol 43 (4), 1-17, 2010	208	2010
HTSeq: Analysing high-throughput sequencing data with Python S Anders, PT Pyl, W Huber	194	2010
DEqMS: a method for accurate variance estimation in differential protein expression analysis Y Zhu, LM Orre, YZ Tran, G Mermelekas, HJ Johansson, A Malyutina, ... Molecular & Cellular Proteomics 19 (6), 1047-1057, 2020	178	2020

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