| Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure G Moura, M Pinheiro, J Arrais, AC Gomes, L Carreto, A Freitas, JL Oliveira, ... Plos one 2 (9), e847, 2007 | 126 | 2007 |
| From the salivary proteome to the OralOme: comprehensive molecular oral biology N Rosa, MJ Correia, JP Arrais, P Lopes, J Melo, JL Oliveira, M Barros Archives of oral biology 57 (7), 853-864, 2012 | 98 | 2012 |
| Parallel DNA pyrosequencing unveils new zebrafish microRNAs AR Soares, PM Pereira, B Santos, C Egas, AC Gomes, J Arrais, ... Bmc Genomics 10, 1-15, 2009 | 87 | 2009 |
| Diversity oriented deep reinforcement learning for targeted molecule generation T Pereira, M Abbasi, B Ribeiro, JP Arrais Journal of cheminformatics 13 (1), 21, 2021 | 75 | 2021 |
| Concept-based query expansion for retrieving gene related publications from MEDLINE S Matos, JP Arrais, J Maia-Rodrigues, JL Oliveira BMC bioinformatics 11, 1-9, 2010 | 61 | 2010 |
| OralCard: a bioinformatic tool for the study of oral proteome JP Arrais, N Rosa, J Melo, ED Coelho, D Amaral, MJ Correia, M Barros, ... Archives of oral biology 58 (7), 762-772, 2013 | 58 | 2013 |
| Designing optimized drug candidates with Generative Adversarial Network M Abbasi, BP Santos, TC Pereira, R Sofia, NRC Monteiro, CJV Simões, ... Journal of cheminformatics 14 (1), 40, 2022 | 54 | 2022 |
| Drug-target interaction prediction: end-to-end deep learning approach NRC Monteiro, B Ribeiro, JP Arrais IEEE/ACM transactions on computational biology and bioinformatics 18 (6 …, 2020 | 50 | 2020 |
| Computational prediction of the human-microbial oral interactome ED Coelho, JP Arrais, S Matos, C Pereira, N Rosa, MJ Correia, M Barros, ... BMC systems biology 8, 1-12, 2014 | 47 | 2014 |
| Computational discovery of putative leads for drug repositioning through drug-target interaction prediction ED Coelho, JP Arrais, JL Oliveira PLoS computational biology 12 (11), e1005219, 2016 | 44 | 2016 |
| DTITR: End-to-end drug–target binding affinity prediction with transformers NRC Monteiro, JL Oliveira, JP Arrais Computers in Biology and Medicine 147, 105772, 2022 | 40 | 2022 |
| The road to personalized medicine in Alzheimer’s disease: the use of artificial intelligence A Silva-Spínola, I Baldeiras, JP Arrais, I Santana Biomedicines 10 (2), 315, 2022 | 36 | 2022 |
| From protein-protein interactions to rational drug design: are computational methods up to the challenge? E D Coelho, J P Arrais, J Luis Oliveira Current topics in medicinal chemistry 13 (5), 602-618, 2013 | 28 | 2013 |
| The landscape of protein biomarkers proposed for periodontal disease: markers with functional meaning N Rosa, MJ Correia, JP Arrais, N Costa, JL Oliveira, M Barros BioMed Research International 2014 (1), 569632, 2014 | 26 | 2014 |
| Deep learning in digital marketing: brand detection and emotion recognition B Ribeiro, G Oliveira, A Laranjeira, JP Arrais International Journal of Machine Intelligence and Sensory Signal Processing …, 2017 | 24 | 2017 |
| Optimizing blood–brain barrier permeation through deep reinforcement learning for de novo drug design T Pereira, M Abbasi, JL Oliveira, B Ribeiro, J Arrais Bioinformatics 37 (Supplement_1), i84-i92, 2021 | 22 | 2021 |
| Interactive and coordinated visualization approaches for biological data analysis A Cruz, JP Arrais, P Machado Briefings in bioinformatics 20 (4), 1513-1523, 2019 | 22 | 2019 |
| New Targets for Zika Virus Determined by Human‐Viral Interactomic: A Bioinformatics Approach E Esteves, N Rosa, MJ Correia, JP Arrais, M Barros BioMed Research International 2017 (1), 1734151, 2017 | 21 | 2017 |
| GeNS: a biological data integration platform J Arrais, JE Pereira, J Fernandes, JL Oliveira International Journal of Computer and Information Engineering 3 (10), 2443-2448, 2009 | 20 | 2009 |
| Few-shot learning with transformers via graph embeddings for molecular property prediction LHM Torres, B Ribeiro, JP Arrais Expert Systems with Applications 225, 120005, 2023 | 17 | 2023 |
Jose L OliveiraUniversity of AveiroVerified email at ua.pt