Design, rationalization, and automation of a catalytic sensing mechanism for homogeneous SERS biosensors SM Quarin, AC Macke, LN Kissell, MS Kelly, A Dayananda, J Ungvary, ... ACS sensors 8 (5), 2000-2010, 2023 | 9 | 2023 |
Factors underlying asymmetric pore dynamics of disaggregase and microtubule-severing AAA+ machines M Damre, A Dayananda, RA Varikoti, G Stan, RI Dima Biophysical Journal 120 (16), 3437-3454, 2021 | 9 | 2021 |
Allosteric communication in the gating mechanism for controlled protein degradation by the bacterial ClpP peptidase A Dayananda, TS Dennison, HYY Fonseka, MS Avestan, Q Wang, ... The Journal of Chemical Physics 158 (12), 2023 | 8 | 2023 |
Probing allosteric mechanisms of the Hsp104 disaggregase using machine learning techniques T Rajaguru, S Jayasekara, A Dayananda, G Stan Biophysical Journal 123 (3), 63a, 2024 | | 2024 |
Probing allosteric communication in the ClpB AAA+ disaggregase Z Zhang, A Dayananda, G Haran, G Stan Biophysical Journal 123 (3), 64a, 2024 | | 2024 |
Single-molecule FRET probes allosteric effects on protein-translocating pore loops of a AAA+ machine M Iljina, H Mazal, A Dayananda, Z Zhang, G Stan, I Riven, G Haran Biophysical Journal 123 (3), 374-388, 2024 | | 2024 |
Probing Asymmetric Conformational Dynamics and Allosteric Regulation of Clp Biological Nanomachines using Machine Learning and Molecular Dynamics Simulations AC Dayananda University of Cincinnati, 2023 | | 2023 |
Probing Allosteric Communication of Bacterial ClpP Peptidase using Dynamic Network Analysis and Machine Learning A Dayananda, TS Dennison, R Tehver, G Stan APS March Meeting Abstracts 2023, D08. 001, 2023 | | 2023 |
Structure-Based Modeling and Machine Learning to Study Dynamic Asymmetry of ClpB Disaggregase Nanomachine T Weidle, A Dayananda, G Stan Undergraduate Scholarly Showcase 4 (1), 2022 | | 2022 |
Conformational dynamics of the ClpB AAA+ protein disaggregase: molecular dynamics studies A Dayananda, RI Dima, G Stan Biophysical Journal 121 (3), 459a, 2022 | | 2022 |
Asymmetric Conformational Dynamics of the ClpB Disaggregase Nanomachine A Dayananda, R Dima, G Stan APS March Meeting Abstracts 2022, N06. 002, 2022 | | 2022 |
Computational Studies of Asymmetric Conformational Dynamics of AAA+ Machines Involved in Protein Disaggregation A Dayananda, R Dima, G Stan APS March Meeting Abstracts 2021, E12. 004, 2021 | | 2021 |
Factors Underlying Asymmetric Dynamics of Disaggregase and Microtubule Severing AAA+ Machines M Damre, A Dayananda, RA Varikoti, G Stan, RI Dima bioRxiv, 2020.11. 25.398420, 2020 | | 2020 |