| Honored by the Glory of Islam MD Baer Oxford University Press, 2008 | 346 | 2008 |
| The Dönme: Jewish Converts, Muslim Revolutionaries, and Secular Turks M Baer Stanford University Press, 2010 | 261 | 2010 |
| The great fire of 1660 and the Islamization of Christian and Jewish space in Istanbul MD Baer International journal of Middle East studies 36 (2), 159-181, 2004 | 110 | 2004 |
| Islamic Conversion Narratives of Women: Social Change and Gendered Religious Hierarchy in Early Modern Ottoman Istanbul. M Baer Gender & History 16 (2), 2004 | 85 | 2004 |
| The Double Bind of Race and Religion: The Conversion of the Dönme to Turkish Secular Nationalism M Baer Converting Cultures, 291-323, 2007 | 78 | 2007 |
| An enemy old and new: The dönme, anti-semitism, and conspiracy theories in the ottoman empire and turkish republic MD Baer Jewish Quarterly Review 103 (4), 523-555, 2013 | 68 | 2013 |
| Globalization, Cosmopolitanism, and the Dönme in Ottoman Salonica and Turkish Istanbul M Baer Journal of World History, 141-170, 2007 | 61 | 2007 |
| History and religious conversion MD Baer | 58 | 2014 |
| Social boundaries of Ottoman women’s experience in eighteenth-century Galata court records FM Göçek, MD Baer Women in the Ottoman Empire: Middle Eastern women in the early modern era, 48-65, 1997 | 47 | 1997 |
| 18. Yüzyıl Galata Kadı Sicillerinde Osmanlı Kadınlarının Toplumsal Sınırları FM Göçek, MD Baer Modernleşmenin Eşiğinde Osmanlı Kadınları, 48-63, 2000 | 43 | 2000 |
| Tolerance and Conversion in the Ottoman Empire: A Conversation M Baer, U Makdisi, A Shryock Comparative Studies in Society and History 51 (4), 927-940, 2009 | 38 | 2009 |
| Turk and Jew in Berlin: the first Turkish migration to Germany and the Shoah MD Baer Comparative Studies in Society and History 55 (2), 330-355, 2013 | 36 | 2013 |
| Sultanic saviors and tolerant Turks: Writing Ottoman Jewish history, denying the Armenian genocide MD Baer Indiana University Press, 2020 | 33 | 2020 |
| The Ottomans: Khans, Caesars, and Caliphs MD Baer Basic Books, 2021 | 25 | 2021 |
| Honored by the glory of Islam: the Ottoman state, non-Muslims, and conversion to Islam in late seventeenth-century Istanbul and Rumelia MD Baer (No Title), 2001 | 23 | 2001 |
| Muslim encounters with Nazism and the Holocaust: the Ahmadi of Berlin and Jewish convert to Islam Hugo Marcus MD Baer The American Historical Review 120 (1), 140-171, 2015 | 21 | 2015 |
| Contested Conversions to Islam: Narratives of Religious Change in the Early Modern Ottoman Empire By Tijana Krstić MD Baer Journal of Islamic Studies 23 (3), 391-394, 2012 | 21 | 2012 |
| Death in the Hippodrome: Sexual politics and legal culture in the reign of Mehmet IV M Baer Past and present 210 (1), 61-91, 2011 | 21 | 2011 |
| German, Jew, Muslim, gay: the life and times of Hugo Marcus MD Baer Columbia University Press, 2020 | 19 | 2020 |
| Manliness, Male Virtue and History Writing at the Seventeenth‐Century Ottoman Court M Baer Gender & History 20 (1), 128-148, 2008 | 19 | 2008 |
