VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses J Guo, B Bolduc, AA Zayed, A Varsani, G Dominguez-Huerta, TO Delmont, ... Microbiome 9, 1-13, 2021 | 745 | 2021 |
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks H Bin Jang, B Bolduc, O Zablocki, JH Kuhn, S Roux, EM Adriaenssens, ... Nature biotechnology 37 (6), 632-639, 2019 | 709 | 2019 |
Marine DNA viral macro-and microdiversity from pole to pole AC Gregory, AA Zayed, N Conceição-Neto, B Temperton, B Bolduc, ... Cell 177 (5), 1109-1123. e14, 2019 | 692 | 2019 |
DRAM for distilling microbial metabolism to automate the curation of microbiome function M Shaffer, MA Borton, BB McGivern, AA Zayed, SL La Rosa, LM Solden, ... Nucleic acids research 48 (16), 8883-8900, 2020 | 616 | 2020 |
Healthy human gut phageome P Manrique, B Bolduc, ST Walk, J van der Oost, WM de Vos, MJ Young Proceedings of the National Academy of Sciences 113 (37), 10400-10405, 2016 | 563 | 2016 |
The gut virome database reveals age-dependent patterns of virome diversity in the human gut AC Gregory, O Zablocki, AA Zayed, A Howell, B Bolduc, MB Sullivan Cell host & microbe 28 (5), 724-740. e8, 2020 | 526 | 2020 |
Host-linked soil viral ecology along a permafrost thaw gradient JB Emerson, S Roux, JR Brum, B Bolduc, BJ Woodcroft, HB Jang, ... Nature microbiology 3 (8), 870-880, 2018 | 456 | 2018 |
vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria B Bolduc, HB Jang, G Doulcier, ZQ You, S Roux, MB Sullivan PeerJ 5, e3243, 2017 | 260 | 2017 |
Soil viruses are underexplored players in ecosystem carbon processing G Trubl, HB Jang, S Roux, JB Emerson, N Solonenko, DR Vik, L Solden, ... MSystems 3 (5), 10.1128/msystems. 00076-18, 2018 | 225 | 2018 |
Single-virus genomics reveals hidden cosmopolitan and abundant viruses F Martinez-Hernandez, O Fornas, M Lluesma Gomez, B Bolduc, ... Nature communications 8 (1), 15892, 2017 | 197 | 2017 |
Discovery of several thousand highly diverse circular DNA viruses MJ Tisza, DV Pastrana, NL Welch, B Stewart, A Peretti, GJ Starrett, ... elife 9, e51971, 2020 | 179 | 2020 |
Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome AA Zayed, JM Wainaina, G Dominguez-Huerta, E Pelletier, J Guo, ... Science 376 (6589), 156-162, 2022 | 173 | 2022 |
Identification of novel positive-strand RNA viruses by metagenomic analysis of archaea-dominated Yellowstone hot springs B Bolduc, DP Shaughnessy, YI Wolf, EV Koonin, FF Roberto, M Young Journal of virology 86 (10), 5562-5573, 2012 | 138 | 2012 |
iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure B Bolduc, K Youens-Clark, S Roux, BL Hurwitz, MB Sullivan The ISME journal 11 (1), 7-14, 2017 | 134 | 2017 |
Comparative metagenomics of eight geographically remote terrestrial hot springs P Menzel, SR Gudbergsdóttir, AG Rike, L Lin, Q Zhang, P Contursi, ... Microbial ecology 70, 411-424, 2015 | 123 | 2015 |
Cenote-Taker 2 democratizes virus discovery and sequence annotation MJ Tisza, AK Belford, G Dominguez-Huerta, B Bolduc, CB Buck Virus evolution 7 (1), veaa100, 2021 | 114 | 2021 |
Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters MC Gazitúa, DR Vik, S Roux, AC Gregory, B Bolduc, B Widner, ... The ISME Journal 15 (4), 981-998, 2021 | 100 | 2021 |
A target-unrelated peptide in an M13 phage display library traced to an advantageous mutation in the gene II ribosome-binding site LA Brammer, B Bolduc, JL Kass, KM Felice, CJ Noren, MF Hall Analytical biochemistry 373 (1), 88-98, 2008 | 96 | 2008 |
Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation AA Pratama, B Bolduc, AA Zayed, ZP Zhong, J Guo, DR Vik, MC Gazitúa, ... PeerJ 9, e11447, 2021 | 82 | 2021 |
Archaeal viruses: diversity, replication, and structure N Dellas, JC Snyder, B Bolduc, MJ Young Annual Review of Virology 1 (1), 399-426, 2014 | 67 | 2014 |