| Pioneer transcription factors in cell reprogramming M Iwafuchi-Doi, KS Zaret Genes & development 28 (24), 2679-2692, 2014 | 687 | 2014 |
| The pioneer transcription factor FoxA maintains an accessible nucleosome configuration at enhancers for tissue-specific gene activation M Iwafuchi-Doi, G Donahue, A Kakumanu, JA Watts, S Mahony, BF Pugh, ... Molecular cell 62 (1), 79-91, 2016 | 444 | 2016 |
| Cell fate control by pioneer transcription factors M Iwafuchi-Doi, KS Zaret Development 143 (11), 1833-1837, 2016 | 351 | 2016 |
| Transcriptional regulatory networks in epiblast cells and during anterior neural plate development as modeled in epiblast stem cells M Iwafuchi-Doi, K Matsuda, K Murakami, H Niwa, PJ Tesar, J Aruga, ... Development 139 (21), 3926-3937, 2012 | 96 | 2012 |
| Gene network transitions in embryos depend upon interactions between a pioneer transcription factor and core histones M Iwafuchi, I Cuesta, G Donahue, N Takenaka, AB Osipovich, ... Nature genetics 52 (4), 418-427, 2020 | 84 | 2020 |
| B1 and B2 Sox gene expression during neural plate development in chicken and mouse embryos: Universal versus species‐dependent features M Uchikawa, M Yoshida, M Iwafuchi‐Doi, K Matsuda, Y Ishida, ... Development, growth & differentiation 53 (6), 761-771, 2011 | 84 | 2011 |
| The Pou5f1/Pou3f-dependent but SoxB-independent regulation of conserved enhancer N2 initiates Sox2 expression during epiblast to neural plate stages in … M Iwafuchi-Doi, Y Yoshida, D Onichtchouk, M Leichsenring, W Driever, ... Developmental biology 352 (2), 354-366, 2011 | 84 | 2011 |
| The mechanistic basis for chromatin regulation by pioneer transcription factors M Iwafuchi‐Doi Wiley Interdisciplinary Reviews: Systems Biology and Medicine 11 (1), e1427, 2019 | 81 | 2019 |
| Chromatin scanning by dynamic binding of pioneer factors KS Zaret, J Lerner, M Iwafuchi-Doi Molecular cell 62 (5), 665-667, 2016 | 76 | 2016 |
| Evolution of non-coding regulatory sequences involved in the developmental process: Reflection of differential employment of paralogous genes as highlighted by Sox2 and group … Y Kamachi, M Iwafuchi, Y Okuda, T Takemoto, M Uchikawa, H Kondoh Proceedings of the Japan Academy, Series B 85 (2), 55-68, 2009 | 57 | 2009 |
| SOX transcription factors direct TCF-independent WNT/β-catenin responsive transcription to govern cell fate in human pluripotent stem cells S Mukherjee, DM Luedeke, L McCoy, M Iwafuchi, AM Zorn Cell reports 40 (8), 2022 | 42 | 2022 |
| In vitro effects of bisphenol A on developing hypothalamic neurons T Iwakura, M Iwafuchi, D Muraoka, M Yokosuka, T Shiga, C Watanabe, ... Toxicology 272 (1-3), 52-58, 2010 | 36 | 2010 |
| Molecular regulation of mammalian hepatic architecture SS Huppert, M Iwafuchi-Doi Current topics in developmental biology 132, 91-136, 2019 | 21 | 2019 |
| Pioneer and PRDM transcription factors coordinate bivalent epigenetic states to safeguard cell fate S Matsui, M Granitto, M Buckley, K Ludwig, S Koigi, J Shiley, ... Molecular Cell, 2024 | 15 | 2024 |
| Effects of estrogen on synapsin I distribution in developing hypothalamic neurons R Ohtani-Kaneko, M Iwafuchi, T Iwakura, D Muraoka, M Yokosuka, ... Neuroscience Research 66 (2), 180–188, 2010 | 12 | 2010 |
| Enhancer analyses using chicken embryo electroporation M Uchikawa, N Nishimura, M Iwafuchi-Doi, H Kondoh Avian and Reptilian Developmental Biology: Methods and Protocols, 191-202, 2017 | 11 | 2017 |
| Profiling Accessible Chromatin and Nucleosomes in the Mammalian Genome HW Lim, M Iwafuchi DNA-Protein Interactions: Methods and Protocols, 59-68, 2023 | 2 | 2023 |
| Protocol for establishing inducible CRISPR interference system for multiple-gene silencing in human pluripotent stem cells S Matsui, JR Shiley, M Granitto, K Ludwig, M Buckley, S Koigi, G Mirizio, ... STAR protocols 5 (3), 103221, 2024 | 1 | 2024 |
| The mechanistic basis for chromatin regulation by pioneer transcription factors. Wiley interdisciplinary reviews M Iwafuchi‐Doi Systems Biology and Medicine, e1427, 2018 | 1 | 2018 |
| Interplay between pioneer transcription factors and epigenetic modifiers in cell reprogramming G Mirizio, S Sampson, M Iwafuchi Regenerative Therapy 28, 246-252, 2025 | | 2025 |
