Feedback regulation in the lactose operon: a mathematical modeling study and comparison with experimental data N Yildirim, MC Mackey Biophysical journal 84 (5), 2841-2851, 2003 | 288 | 2003 |
β2-adrenergic receptor signaling and desensitization elucidated by quantitative modeling of real time cAMP dynamics JD Violin, LM DiPilato, N Yildirim, TC Elston, J Zhang, RJ Lefkowitz Journal of Biological Chemistry 283 (5), 2949-2961, 2008 | 287 | 2008 |
Dynamics and bistability in a reduced model of the lac operon N Yildirim, M Santillan, D Horike, MC Mackey Chaos: An Interdisciplinary Journal of Nonlinear Science 14 (2), 279-292, 2004 | 118 | 2004 |
Regulators of G protein signaling and transient activation of signaling: experimental and computational analysis reveals negative and positive feedback controls on G protein … N Hao, N Yildirim, Y Wang, TC Elston, HG Dohlman Journal of Biological Chemistry 278 (47), 46506-46515, 2003 | 108 | 2003 |
An improvement on Fibonacci search method in optimization theory M Subasi, N Yildirim, B Yildiz Applied mathematics and computation 147 (3), 893-901, 2004 | 59 | 2004 |
Modeling operon dynamics: the tryptophan and lactose operons as paradigms MC Mackey, M Santillán, N Yildirim Comptes rendus. Biologies 327 (3), 211-224, 2004 | 39 | 2004 |
Parameter estimation of nonlinear models in biochemistry: a comparative study on optimization methods N Yildirim, F Akçay, H Okur, D Yildirim Applied mathematics and computation 140 (1), 29-36, 2003 | 25 | 2003 |
Combined computational and experimental analysis reveals mitogen-activated protein kinase–mediated feedback phosphorylation as a mechanism for signaling specificity N Hao, N Yildirim, MJ Nagiec, SC Parnell, B Errede, HG Dohlman, ... Molecular biology of the cell 23 (19), 3899-3910, 2012 | 22 | 2012 |
Mathematical modeling of RGS and G-protein regulation in yeast N Yildirim, N Hao, HG Dohlman, TC Elston Methods in enzymology 389, 383-398, 2004 | 19 | 2004 |
Derivation of conservation relationships for metabolic networks using MAPLE N Yildirim, M Bayram Applied Mathematics and Computation 112 (2-3), 255-263, 2000 | 11 | 2000 |
An analysis of the kinetics of unstable enzymatic systems using MAPLE N Yildirim, M Bayram Applied mathematics and computation 112 (1), 41-48, 2000 | 11 | 2000 |
Mathematical modeling of the low and high affinity arabinose transport systems in Escherichia coli N Yildirim Molecular BioSystems 8 (4), 1319-1324, 2012 | 10 | 2012 |
Deterministic and stochastic simulation and analysis of biochemical reaction networks: The lactose operon example N Yildirim, C Kazanci Methods in enzymology 487, 371-395, 2011 | 9 | 2011 |
Kinetic analysis of multi enzyme systems: A case study of the closed system of creatine kinase, hexokinase and glucose 6-phosphate dehydrogenase N Yildirim, M Çiftçi, Öİ Küfrevioğlu Journal of mathematical chemistry 31, 121-130, 2002 | 7 | 2002 |
Metabolic control analysis of trio enzymes system M Bayram, N Yildirim Applied mathematics and computation 170 (2), 948-957, 2005 | 6 | 2005 |
Mathematical modeling reveals differential regulation of MAPK activity by phosphatase proteins in the yeast pheromone response pathway N Dyjack, C Azeredo-Tseng, N Yildirim Molecular BioSystems 13 (7), 1323-1335, 2017 | 5 | 2017 |
Bistability in the lactose operon of Escherichia coli: a comparison of differential equation and Boolean network models R Robeva, N Yildirim Mathematical concepts and methods in modern biology, 37-74, 2013 | 5 | 2013 |
Mathematical modeling deciphers the benefits of alternatively-designed conserved activatory and inhibitory gene circuits A Ay, N Wilner, N Yildirim Molecular BioSystems 11 (7), 2017-2030, 2015 | 4 | 2015 |
Dynamics matter: differences and similarities between alternatively designed mechanisms A Ay, N Yildirim Molecular BioSystems 10 (7), 1948-1957, 2014 | 4 | 2014 |
Use of symbolic and numeric computation techniques in analysis of biochemical reaction networks N Yildirim International Journal of Quantum Chemistry 106 (1), 256-265, 2006 | 4 | 2006 |