| PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes N Segata, D Börnigen, XC Morgan, C Huttenhower Nature communications 4 (1), 2304, 2013 | 805 | 2013 |
| Computational meta'omics for microbial community studies N Segata, D Boernigen, TL Tickle, XC Morgan, WS Garrett, ... Molecular systems biology 9 (1), 666, 2013 | 403 | 2013 |
| A guide to web tools to prioritize candidate genes LC Tranchevent, FB Capdevila, D Nitsch, B De Moor, P De Causmaecker, ... Briefings in Bioinformatics 12 (1), 22-32, 2011 | 240 | 2011 |
| Candidate gene prioritization by network analysis of differential expression using machine learning approaches D Nitsch, JP Gonçalves, F Ojeda, B De Moor, Y Moreau BMC bioinformatics 11, 1-16, 2010 | 143 | 2010 |
| Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer D Börnigen, B Ren, R Pickard, J Li, E Ozer, EM Hartmann, W Xiao, ... Scientific reports 7 (1), 17686, 2017 | 138 | 2017 |
| Combined mRNA microarray and proteomic analysis of eutopic endometrium of women with and without endometriosis A Fassbender, N Verbeeck, D Börnigen, CM Kyama, A Bokor, ... Human Reproduction 27 (7), 2020-2029, 2012 | 108 | 2012 |
| Long noncoding RNA NEAT1 modulates immune cell functions and is suppressed in early onset myocardial infarction patients M Gast, BH Rauch, A Haghikia, S Nakagawa, J Haas, A Stroux, D Schmidt, ... Cardiovascular research 115 (13), 1886-1906, 2019 | 105 | 2019 |
| An unbiased evaluation of gene prioritization tools D Börnigen, LC Tranchevent, F Bonachela-Capdevila, K Devriendt, ... | 105 | 2012 |
| COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 90 | 2021 |
| PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes. Nat Commun 4: 2304 N Segata, D Börnigen, XC Morgan, C Huttenhower | 86 | 2013 |
| Network analysis of differential expression for the identification of disease-causing genes D Nitsch, LC Tranchevent, B Thienpont, L Thorrez, H Van Esch, ... PloS one 4 (5), e5526, 2009 | 84 | 2009 |
| Functional profiling of the gut microbiome in disease-associated inflammation D Börnigen, XC Morgan, EA Franzosa, B Ren, RJ Xavier, WS Garrett, ... Genome medicine 5, 1-13, 2013 | 81 | 2013 |
| PINTA: a web server for network-based gene prioritization from expression data D Nitsch, LC Tranchevent, JP Gonçalves, JK Vogt, SC Madeira, Y Moreau Nucleic Acids Research 39 (suppl 2), W334-W338, 2011 | 80 | 2011 |
| Finding the targets of a drug by integration of gene expression data with a protein interaction network G Laenen, L Thorrez, D Börnigen, Y Moreau Molecular BioSystems 9 (7), 1676-1685, 2013 | 68 | 2013 |
| Association of circulating metabolites with risk of coronary heart disease in a European population: results from the Biomarkers for Cardiovascular Risk Assessment in Europe … E Cavus, M Karakas, FM Ojeda, J Kontto, G Veronesi, MM Ferrario, ... JAMA cardiology 4 (12), 1270-1279, 2019 | 51 | 2019 |
| Lynx: a database and knowledge extraction engine for integrative medicine D Sulakhe, S Balasubramanian, B Xie, B Feng, A Taylor, S Wang, ... Nucleic acids research 42 (D1), D1007-D1012, 2014 | 43 | 2014 |
| Glioma escape signature and clonal development under immune pressure CL Maire, M Mohme, M Bockmayr, KD Fita, K Riecken, D Börnigen, ... The Journal of Clinical Investigation 130 (10), 5257-5271, 2020 | 33 | 2020 |
| Classification of brain tumors by nanopore sequencing of cell-free DNA from cerebrospinal fluid AK Afflerbach, C Rohrandt, B Brändl, M Sönksen, J Hench, S Frank, ... Clinical chemistry 70 (1), 250-260, 2024 | 29 | 2024 |
| Concordance of gene expression in human protein complexes reveals tissue specificity and pathology D Börnigen, TH Pers, L Thorrez, C Huttenhower, Y Moreau, S Brunak Nucleic acids research 41 (18), e171-e171, 2013 | 29 | 2013 |
| Computational reconstruction of NFκB pathway interaction mechanisms during prostate cancer D Börnigen, S Tyekucheva, X Wang, JR Rider, GS Lee, LA Mucci, ... PLoS computational biology 12 (4), e1004820, 2016 | 27 | 2016 |
