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Vijini Mallawaarachchi
Vijini Mallawaarachchi
Research Fellow at Flinders University
Bestätigte E-Mail-Adresse bei flinders.edu.au - Startseite
Titel
Zitiert von
Zitiert von
Jahr
GraphBin: refined binning of metagenomic contigs using assembly graphs
V Mallawaarachchi, A Wickramarachchi, Y Lin
Bioinformatics 36 (11), 3307-3313, 2020
832020
The human gut virome: composition, colonization, interactions, and impacts on human health
E Pargin, MJ Roach, A Skye, B Papudeshi, LK Inglis, V Mallawaarachchi, ...
Frontiers in Microbiology 14, 963173, 2023
332023
MetaBCC-LR: Metagenomics Binning by Coverage and Composition for Long Reads
A Wickramarachchi, V Mallawaarachchi, V Rajan, Y Lin
28th Conf. on Intelligent Systems for Molecular Biology ISMB'20, 2020
282020
Managing complex workflows in bioinformatics: an interactive toolkit with gpu acceleration
A Welivita, I Perera, D Meedeniya, A Wickramarachchi, ...
IEEE transactions on nanobioscience 17 (3), 199-208, 2018
272018
Change Detection and Notification of Webpages: A Survey
V Mallawaarachchi, L Meegahapola, R Alwis, E Nimalarathna, ...
ACM Computing Surveys 53 (1), 2020
252020
Dnaapler: a tool to reorient circular microbial genomes
G Bouras, SR Grigson, B Papudeshi, V Mallawaarachchi, M Roach
Journal of Open Source Software 9 (93), 5968, 2024
212024
Ten simple rules and a template for creating workflows-as-applications
MJ Roach, NT Pierce-Ward, R Suchecki, V Mallawaarachchi, ...
PLoS computational biology 18 (12), e1010705, 2022
212022
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies
G Bouras, G Houtak, RR Wick, V Mallawaarachchi, MJ Roach, ...
Microbial Genomics 10 (5), 2024
202024
Phables: from fragmented assemblies to high-quality bacteriophage genomes
V Mallawaarachchi, MJ Roach, P Decewicz, B Papudeshi, SK Giles, ...
Bioinformatics 39 (10), btad586, 2023
202023
MetaCoAG: Binning metagenomic contigs via composition, coverage and assembly graphs
V Mallawaarachchi, Y Lin
International Conference on Research in Computational Molecular Biology, 70-85, 2022
202022
Plassembler: an automated bacterial plasmid assembly tool
G Bouras, AE Sheppard, V Mallawaarachchi, S Vreugde
Bioinformatics 39 (7), btad409, 2023
19*2023
Improving metagenomic binning results with overlapped bins using assembly graphs
VG Mallawaarachchi, AS Wickramarachchi, Y Lin
Algorithms for Molecular Biology 16, 1-18, 2021
172021
GraphBin2: Refined and overlapped binning of metagenomic contigs using assembly graphs
VG Mallawaarachchi, AS Wickramarachchi, Y Lin
20th International Workshop on Algorithms in Bioinformatics, WABI 2020, 8, 2020
172020
Quantitative metaproteomics reveals composition and metabolism characteristics of microbial communities in Chinese liquor fermentation starters
J Zhao, Y Yang, L Chen, J Zheng, X Lv, D Li, Z Fang, C Shen, ...
Frontiers in Microbiology 13, 5215, 2023
162023
RepBin: Constraint-based graph representation learning for metagenomic binning
H Xue, V Mallawaarachchi, Y Zhang, V Rajan, Y Lin
Proceedings of the 36th AAAI Conference on Artificial Intelligence 36 (4 …, 2022
152022
Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2
B Papudeshi, AA Vega, C Souza, SK Giles, V Mallawaarachchi, ...
Microbial Genomics 9 (9), 2023
12*2023
Accurate binning of metagenomic contigs using composition, coverage, and assembly graphs
V Mallawaarachchi, Y Lin
Journal of Computational Biology 29 (12), 1357-1376, 2022
122022
Experiential learning in bioinformatics–learner support for complex workflow modelling and analysis
V Mallawaarachchi, A Wickaramarachchi, A Weliwita, I Perera, ...
International Journal of Emerging Technologies in Learning 13 (12), 19-34, 2018
112018
Metaproteomics profiling of the microbial communities in fermentation starters (Daqu) during multi-round production of Chinese liquor
J Zhao, Y Yang, M Teng, J Zheng, B Wang, V Mallawaarachchi, Y Lin, ...
Frontiers in Nutrition 10, 1139836, 2023
82023
Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics
E Wu, V Mallawaarachchi, J Zhao, Y Yang, H Liu, X Wang, C Shen, Y Lin, ...
Microbiome 12, 58, 2024
72024
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