| FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species S Priebe, C Kreisel, F Horn, R Guthke, J Linde Bioinformatics 31 (3), 445-446, 2015 | 233 | 2015 |
| An Interspecies Regulatory Network Inferred from Simultaneous RNA-seq of Candida albicans Invading Innate Immune Cells L Tierney, J Linde, S Müller, S Brunke, JC Molina, B Hube, U Schöck, ... Frontiers in microbiology 3, 85, 2012 | 153 | 2012 |
| FungiFun: a web-based application for functional categorization of fungal genes and proteins S Priebe, J Linde, D Albrecht, R Guthke, AA Brakhage Fungal Genetics and Biology 48 (4), 353-358, 2011 | 110 | 2011 |
| Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina) VU Schwartze, S Winter, E Shelest, M Marcet-Houben, F Horn, S Wehner, ... PLoS Genet 10 (8), e1004496, 2014 | 95 | 2014 |
| Microevolution of Candida albicans in macrophages restores filamentation in a nonfilamentous mutant A Wartenberg, J Linde, R Martin, M Schreiner, F Horn, ID Jacobsen, ... PLoS Genet 10 (12), e1004824, 2014 | 93 | 2014 |
| Defining the transcriptomic landscape of Candida glabrata by RNA-Seq J Linde, S Duggan, M Weber, F Horn, P Sieber, D Hellwig, K Riege, ... Nucleic acids research 43 (3), 1392-1406, 2015 | 87 | 2015 |
| Two's company: studying interspecies relationships with dual RNA-seq T Wolf, P Kämmer, S Brunke, J Linde Current opinion in microbiology 42, 7-12, 2018 | 77 | 2018 |
| Network modeling reveals cross talk of MAP kinases during adaptation to caspofungin stress in Aspergillus fumigatus R Altwasser, C Baldin, J Weber, R Guthke, O Kniemeyer, AA Brakhage, ... PLoS One 10 (9), 2015 | 72 | 2015 |
| Emergence of Multidrug-Resistant Salmonella enterica Subspecies enterica Serovar Infantis of Multilocus Sequence Type 2283 in German Broiler Farms S García-Soto, M Abdel-Glil, H Tomaso, J Linde, U Methner Front. Microbiol. 11 (1741), 2020 | 70 | 2020 |
| Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ... Scientific reports 6 (1), 34589, 2016 | 69 | 2016 |
| Computational prediction of molecular pathogen-host interactions based on dual transcriptome data S Schulze, SG Henkel, D Driesch, R Guthke, J Linde Frontiers in microbiology 6, 65, 2015 | 69 | 2015 |
| Data-and knowledge-based modeling of gene regulatory networks: an update J Linde, S Schulze, SG Henkel, R Guthke EXCLI journal 14, 346, 2015 | 69 | 2015 |
| Regulatory networks controlling nitrogen sensing and uptake in Candida albicans S Ramachandra, J Linde, M Brock, R Guthke, B Hube, S Brunke PLoS One 9 (3), e92734, 2014 | 68 | 2014 |
| Use of systems biology to decipher host–pathogen interaction networks and predict biomarkers A Dix, S Vlaic, R Guthke, J Linde Clinical Microbiology and Infection 22 (7), 600-606, 2016 | 58 | 2016 |
| Dual-species transcriptional profiling during systemic candidiasis reveals organ-specific host-pathogen interactions B Hebecker, S Vlaic, T Conrad, M Bauer, S Brunke, M Kapitan, J Linde, ... Scientific reports 6, 2016 | 53 | 2016 |
| A novel hybrid iron regulation network combines features from pathogenic and nonpathogenic yeasts F Gerwien, A Safyan, S Wisgott, F Hille, P Kaemmer, J Linde, S Brunke, ... MBio 7 (5), 10.1128/mbio. 01782-16, 2016 | 50 | 2016 |
| Biomarker-based classification of bacterial and fungal whole-blood infections in a genome-wide expression study A Dix, K Hünniger, M Weber, R Guthke, O Kurzai, J Linde Frontiers in microbiology 6, 171, 2015 | 48 | 2015 |
| Comparative study on alternative splicing in human fungal pathogens suggests its involvement during host invasion P Sieber, K Voigt, P Kämmer, S Brunke, S Schuster, J Linde Frontiers in microbiology 9, 2313, 2018 | 44 | 2018 |
| Regulatory network modelling of iron acquisition by a fungal pathogen in contact with epithelial cells J Linde, D Wilson, B Hube, R Guthke BMC Systems Biology 4, 1-14, 2010 | 43 | 2010 |
| Regulatory interactions for iron homeostasis in Aspergillus fumigatus inferred by a Systems Biology approach J Linde, P Hortschansky, E Fazius, AA Brakhage, R Guthke, H Haas BMC Systems Biology 6, 1-14, 2012 | 42 | 2012 |
Sascha BrunkeDept. MPM, Hans Knoell Institute, Jena, GermanyBestätigte E-Mail-Adresse bei hki-jena.de
