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Pavel Dvořák
Pavel Dvořák
Associate Professor and PI at Masaryk University, Brno, Czech Republic
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Bioremediation 3.0: Engineering pollutant-removing bacteria in the times of systemic biology.
P Dvořák, I Nikel, Pablo, J Damborský, V de Lorenzo
Biotechnology Advances, 2017
3622017
Exacerbation of substrate toxicity by IPTG in Escherichia coli BL21(DE3) carrying a synthetic metabolic pathway
P Dvorak, L Chrast, PI Nikel, R Fedr, K Soucek, M Sedlackova, ...
Microbial cell factories 14, 1-15, 2015
2872015
Haloalkane dehalogenases: biotechnological applications
T Koudelakova, S Bidmanova, P Dvorak, A Pavelka, R Chaloupkova, ...
Biotechnology journal 8 (1), 32-45, 2013
1922013
Pathways and mechanisms for product release in the engineered haloalkane dehalogenases explored using classical and random acceleration molecular dynamics simulations
M Klvana, M Pavlova, T Koudelakova, R Chaloupkova, P Dvorak, ...
Journal of molecular biology 392 (5), 1339-1356, 2009
1292009
Refactoring the upper sugar metabolism of Pseudomonas putida for co-utilization of cellobiose, xylose, and glucose.
P Dvořák, V de Lorenzo
Metabolic Engineering, 2018
1252018
Engineering a de novo transport tunnel
J Brezovsky, P Babkova, O Degtjarik, A Fortova, A Gora, I Iermak, ...
ACS Catalysis 6 (11), 7597-7610, 2016
1182016
Polyhydroxyalkanoates synthesis by halophiles and thermophiles: towards sustainable production of microbial bioplastics
S Obruča, P Dvořák, P Sedláček, M Koller, K Sedlář, I Pernicová, ...
Biotechnology Advances 58, 107906, 2022
982022
Immobilized synthetic pathway for biodegradation of toxic recalcitrant pollutant 1, 2, 3-trichloropropane
P Dvorak, S Bidmanova, J Damborsky, Z Prokop
Environmental science & technology 48 (12), 6859-6866, 2014
822014
Exploration of enzyme diversity by integrating bioinformatics with expression analysis and biochemical characterization
P Vanacek, E Sebestova, P Babkova, S Bidmanova, L Daniel, P Dvorak, ...
Acs Catalysis 8 (3), 2402-2412, 2018
792018
Computer‐assisted engineering of hyperstable fibroblast growth factor 2
P Dvorak, D Bednar, P Vanacek, L Balek, L Eiselleova, V Stepankova, ...
Biotechnology and bioengineering 115 (4), 850-862, 2018
772018
SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes
E Martínez-García, S Fraile, E Algar, T Aparicio, E Velázquez, B Calles, ...
Nucleic Acids Research 51 (D1), D1558-D1567, 2023
642023
Computer-assisted engineering of the synthetic pathway for biodegradation of a toxic persistent pollutant
NP Kurumbang, P Dvorak, J Bendl, J Brezovsky, Z Prokop, J Damborsky
ACS synthetic biology 3 (3), 172-181, 2014
612014
Maximizing the efficiency of multienzyme process by stoichiometry optimization.
P Dvorak, NP Kurumbang, J Bendl, J Brezovsky, Z Prokop, J Damborsky
ChemBioChem 15 (13), 1891-5, 2014
402014
Biotransformation of d‐xylose to d‐xylonate coupled to medium‐chain‐length polyhydroxyalkanoate production in cellobiose‐grown Pseudomonas putida EM42
P Dvořák, J Kováč, V de Lorenzo
Microbial biotechnology 13 (4), 1273-1283, 2020
382020
Surface Display of Designer Protein Scaffolds on Genome-Reduced Strains of Pseudomonas putida
P Dvořák, EA Bayer, V de Lorenzo
ACS Synthetic Biology 9 (10), 2749–2764, 2020
282020
Engineering of Pseudomonas putida for accelerated co-utilization of glucose and cellobiose yields aerobic overproduction of pyruvate explained by an upgraded metabolic model
D Bujdoš, B Popelářová, DC Volke, PI Nikel, N Sonnenschein, P Dvořák
Metabolic Engineering 75, 29-46, 2023
222023
Computational Modelling of Metabolic Burden and Substrate Toxicity in Escherichia coli Carrying a Synthetic Metabolic Pathway
M Demko, L Chrást, P Dvořák, J Damborský, D Šafránek
Microorganisms 7 (11), 553, 2019
142019
Synthetically-primed adaptation of Pseudomonas putida to a non-native substrate D-xylose
P Dvořák, B Burýšková, B Popelářová, BE Ebert, T Botka, D Bujdoš, ...
Nature Communications 15 (1), 2666, 2024
122024
An automated DIY framework for experimental evolution of Pseudomonas putida
DR Espeso, P Dvořák, T Aparicio, V de Lorenzo
Microbial Biotechnology 14 (6), 2679-2685, 2021
102021
Engineering of the synthetic metabolic pathway for biodegradation of environmental pollutant
P Dvořák
Ph. D. Thesis, 2014
62014
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