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John Wagner
John Wagner
IBM Research - Australia
Bestätigte E-Mail-Adresse bei au1.ibm.com
Titel
Zitiert von
Zitiert von
Jahr
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ...
Bioinformatics 19 (4), 524-531, 2003
38702003
Computational cell biology
JJ Tyson, CP Fall, ES Marland, JM Wagner
Fall C., Marland E., Wagner J., Tyson J., Eds, 230-260, 2002
1848*2002
Effects of rapid buffers on Ca2+ diffusion and Ca2+ oscillations
J Wagner, J Keizer
Biophysical journal 67 (1), 447-456, 1994
5771994
A plausible model for the digital response of p53 to DNA damage
L Ma, J Wagner, JJ Rice, W Hu, AJ Levine, GA Stolovitzky
Proceedings of the National Academy of Sciences 102 (40), 14266-14271, 2005
4272005
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
2572020
Validity of the rapid buffering approximation near a point source of calcium ions
GD Smith, J Wagner, J Keizer
Biophysical Journal 70 (6), 2527-2539, 1996
1781996
A single nucleotide polymorphism in the MDM2 gene disrupts the oscillation of p53 and MDM2 levels in cells
W Hu, Z Feng, L Ma, J Wagner, JJ Rice, G Stolovitzky, AJ Levine
Cancer research 67 (6), 2757-2765, 2007
1512007
Risk optimization through reinforcement learning
JR Kozloski, TM Lynar, S Pandey, JM Wagner
US Patent 11,810,038, 2023
1202023
p53–Mdm2 loop controlled by a balance of its feedback strength and effective dampening using ATM and delayed feedback
J Wagner, L Ma, JJ Rice, W Hu, AJ Levine, GA Stolovitzky
IEE Proceedings-Systems Biology 152 (3), 109-118, 2005
1122005
A wave of IP3 production accompanies the fertilization Ca2+ wave in the egg of the frog, Xenopus laevis: theoretical and experimental support
J Wagner, CP Fall, F Hong, CE Sims, NL Allbritton, RA Fontanilla, ...
Cell calcium 35 (5), 433-447, 2004
1062004
Unique Aspects of the Structure and Dynamics of Elementary Iβ Cellulose Microfibrils Revealed by Computational Simulations
DP Oehme, MT Downton, MS Doblin, J Wagner, MJ Gidley, A Bacic
Plant physiology 168 (1), 3-17, 2015
992015
High Venous Urea Concentrations in the Opposite Arm: A Consequence of Hemodialysis-lnduced Compartment Disequilibrium
TA Depner, S Rizwan, AY Cheer, JM Wagner, LA Eder
ASAIO Journal 37 (3), M141-M143, 1991
951991
Simulation of the fertilization Ca2+ wave in Xenopus laevis eggs
J Wagner, YX Li, J Pearson, J Keizer
Biophysical journal 75 (4), 2088-2097, 1998
941998
Ordered cyclic motifs contribute to dynamic stability in biological and engineered networks
A Ma'Ayan, GA Cecchi, J Wagner, AR Rao, R Iyengar, G Stolovitzky
Proceedings of the National Academy of Sciences 105 (49), 19235-19240, 2008
692008
Evolutionary dynamics of the cellulose synthase gene superfamily in grasses
JG Schwerdt, K MacKenzie, F Wright, D Oehme, JM Wagner, AJ Harvey, ...
Plant physiology 168 (3), 968-983, 2015
682015
Analysis of nonlinear dynamics on arbitrary geometries with the Virtual Cell
JC Schaff, BM Slepchenko, YS Choi, J Wagner, D Resasco, LM Loew
Chaos: An Interdisciplinary Journal of Nonlinear Science 11 (1), 115-131, 2001
662001
Internet of blockchains: Techniques and challenges ahead
HT Vo, Z Wang, D Karunamoorthy, J Wagner, E Abebe, M Mohania
2018 IEEE international conference on internet of things (iThings) and IEEE …, 2018
612018
Gaining insight into cell wall cellulose macrofibril organisation by simulating microfibril adsorption
DP Oehme, MS Doblin, J Wagner, A Bacic, MT Downton, MJ Gidley
Cellulose 22, 3501-3520, 2015
602015
Dimerization of bacterial diaminopimelate epimerase is essential for catalysis
L Hor, RCJ Dobson, MT Downton, J Wagner, CA Hutton, MA Perugini
Journal of Biological Chemistry 288 (13), 9238-9248, 2013
592013
An ultrascalable solution to large-scale neural tissue simulation
J Kozloski, J Wagner
Frontiers in neuroinformatics 5, 15, 2011
572011
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