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idoia ochoa
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Zitiert von
Zitiert von
Jahr
Deepzip: Lossless data compression using recurrent neural networks
M Goyal, K Tatwawadi, S Chandak, I Ochoa
arXiv preprint arXiv:1811.08162, 2018
1112018
SPRING: a next-generation compressor for FASTQ data
S Chandak, K Tatwawadi, I Ochoa, M Hernaez, T Weissman
Bioinformatics 35 (15), 2674-2676, 2019
942019
Effect of lossy compression of quality scores on variant calling
I Ochoa, M Hernaez, R Goldfeder, T Weissman, E Ashley
Briefings in bioinformatics 18 (2), 183-194, 2017
892017
QVZ: lossy compression of quality values
G Malysa, M Hernaez, I Ochoa, M Rao, K Ganesan, T Weissman
Bioinformatics 31 (19), 3122-3129, 2015
852015
QualComp: a new lossy compressor for quality scores based on rate distortion theory
I Ochoa, H Asnani, D Bharadia, M Chowdhury, T Weissman, G Yona
BMC bioinformatics 14, 1-16, 2013
672013
Genomic data compression
M Hernaez, D Pavlichin, T Weissman, I Ochoa
Annual Review of Biomedical Data Science 2 (1), 19-37, 2019
612019
FaStore: a space-saving solution for raw sequencing data
Ł Roguski, I Ochoa, M Hernaez, S Deorowicz
Bioinformatics 34 (16), 2748-2756, 2018
592018
iDoComp: a compression scheme for assembled genomes
I Ochoa, M Hernaez, T Weissman
Bioinformatics 31 (5), 626-633, 2014
592014
DZip: Improved general-purpose loss less compression based on novel neural network modeling
M Goyal, K Tatwawadi, S Chandak, I Ochoa
2021 data compression conference (DCC), 153-162, 2021
542021
Reference based genome compression
BG Chern, I Ochoa, A Manolakos, A No, K Venkat, T Weissman
2012 IEEE Information Theory Workshop, 427-431, 2012
442012
CaMoDi: a new method for cancer module discovery
A Manolakos, I Ochoa, K Venkat, AJ Goldsmith, O Gevaert
BMC genomics 15, 1-10, 2014
272014
GTRAC: fast retrieval from compressed collections of genomic variants
K Tatwawadi, M Hernaez, I Ochoa, T Weissman
Bioinformatics 32 (17), i479-i486, 2016
232016
Aligned genomic data compression via improved modeling
I Ochoa, M Hernaez, T Weissman
Journal of bioinformatics and computational biology 12 (06), 1442002, 2014
212014
An introduction to MPEG-G, the new ISO standard for genomic information representation
C Alberti, T Paridaens, J Voges, D Naro, JJ Ahmad, M Ravasi, D Renzi, ...
bioRxiv, 426353, 2018
202018
A cluster-based approach to compression of quality scores
M Hernaez, I Ochoa, T Weissman
2016 Data Compression Conference (DCC), 261-270, 2016
172016
ENANO: Encoder for NANOpore FASTQ files
G Dufort y Álvarez, G Seroussi, P Smircich, J Sotelo, I Ochoa, Á Martín
Bioinformatics 36 (16), 4506-4507, 2020
162020
RENANO: a REference-based compressor for NANOpore FASTQ files
G Dufort y Álvarez, G Seroussi, P Smircich, J Sotelo-Silveira, I Ochoa, ...
Bioinformatics 37 (24), 4862-4864, 2021
142021
Denoising of aligned genomic data
I Fischer-Hwang, I Ochoa, T Weissman, M Hernaez
Scientific reports 9 (1), 15067, 2019
142019
SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes
J Peng, G Serrano, IM Traniello, ME Calleja-Cervantes, UV Chembazhi, ...
Communications biology 5 (1), 351, 2022
122022
GeneComp, a new reference-based compressor for SAM files
R Long, M Hernaez, I Ochoa, T Weissman
2017 Data Compression Conference (DCC), 330-339, 2017
122017
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