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Alfonso Valencia
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An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
172002012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
60982007
GENCODE: the reference human genome annotation for The ENCODE Project
J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ...
Genome research 22 (9), 1760-1774, 2012
53622012
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1958*2020
Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia
XS Puente, M Pinyol, V Quesada, L Conde, GR Ordóñez, N Villamor, ...
Nature 475 (7354), 101-105, 2011
19282011
Expanded encyclopaedias of DNA elements in the human and mouse genomes
Nature 583, 699–710, 2020
15742020
A user's guide to the encyclopedia of DNA elements (ENCODE)
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...
PLoS Biology 9 (4), e1001046, 2011
14812011
Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia
V Quesada, L Conde, N Villamor, GR Ordóñez, P Jares, L Bassaganyas, ...
Nature genetics 44 (1), 47-52, 2012
12742012
The allelic landscape of human blood cell trait variation and links to common complex disease
WJ Astle, H Elding, T Jiang, D Allen, D Ruklisa, AL Mann, D Mead, ...
Cell 167 (5), 1415-1429. e19, 2016
12522016
IntAct: an open source molecular interaction database
H Hermjakob, L Montecchi‐Palazzi, C Lewington, S Mudali, S Kerrien, ...
Nucleic acids research 32 (suppl_1), D452-D455, 2004
12042004
Correlated mutations and residue contacts in proteins
U Göbel, C Sander, R Schneider, A Valencia
Proteins: Structure, Function, and Bioinformatics 18 (4), 309-317, 1994
10951994
An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins.
P Bork, C Sander, A Valencia
Proceedings of the National Academy of Sciences 89 (16), 7290-7294, 1992
10801992
Non-coding recurrent mutations in chronic lymphocytic leukaemia
XS Puente, S Beà, R Valdés-Mas, N Villamor, J Gutiérrez-Abril, ...
Nature 526 (7574), 519-524, 2015
10462015
Distinct DNA methylomes of newborns and centenarians
H Heyn, N Li, HJ Ferreira, S Moran, DG Pisano, A Gomez, J Diez, ...
Proceedings of the National Academy of Sciences 109 (26), 10522-10527, 2012
9112012
A hierarchical unsupervised growing neural network for clustering gene expression patterns
J Herrero, A Valencia, J Dopazo
Bioinformatics 17 (2), 126-136, 2001
8172001
Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes
I Ezkurdia, D Juan, JM Rodriguez, A Frankish, M Diekhans, J Harrow, ...
Human molecular genetics 23 (22), 5866-5878, 2014
7912014
The ras protein family: evolutionary tree and role of conserved amino acids
A Valencia, P Chardin, A Wittinghofer, C Sander
Biochemistry 30 (19), 4637-4648, 1991
7701991
Genetic drivers of epigenetic and transcriptional variation in human immune cells
L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ...
Cell 167 (5), 1398-1414. e24, 2016
6992016
Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia
M Kulis, S Heath, M Bibikova, AC Queirós, A Navarro, G Clot, ...
Nature genetics 44 (11), 1236-1242, 2012
6802012
Correlated mutations contain information about protein-protein interaction
F Pazos, M Helmer-Citterich, G Ausiello, A Valencia
Journal of molecular biology 271 (4), 511-523, 1997
6801997
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