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Levi Waldron
Levi Waldron
City University of New York Graduate School of Public Health and Health Policy
Bestätigte E-Mail-Adresse bei sph.cuny.edu - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Metagenomic biomarker discovery and explanation
N Segata, J Izard, L Waldron, D Gevers, L Miropolsky, WS Garrett, ...
Genome biology 12, 1-18, 2011
138052011
Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115-121, 2015
37232015
Metagenomic microbial community profiling using unique clade-specific marker genes
N Segata, L Waldron, A Ballarini, V Narasimhan, O Jousson, ...
Nature methods 9 (8), 811-814, 2012
19872012
Multivariable association discovery in population-scale meta-omics studies
H Mallick, A Rahnavard, LJ McIver, S Ma, Y Zhang, LH Nguyen, TL Tickle, ...
PLoS computational biology 17 (11), e1009442, 2021
15202021
Stem cell gene expression programs influence clinical outcome in human leukemia
K Eppert, K Takenaka, ER Lechman, L Waldron, B Nilsson, P Van Galen, ...
Nature medicine 17 (9), 1086-1093, 2011
12182011
Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples
N Segata, SK Haake, P Mannon, KP Lemon, L Waldron, D Gevers, ...
Genome biology 13, 1-18, 2012
12102012
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ...
Nature medicine 25 (4), 679-689, 2019
10802019
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ...
Nature medicine 25 (4), 667-678, 2019
8342019
Orchestrating single-cell analysis with Bioconductor
RA Amezquita, ATL Lun, E Becht, VJ Carey, LN Carpp, L Geistlinger, ...
Nature methods 17 (2), 137-145, 2020
8152020
Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals
F Asnicar, SE Berry, AM Valdes, LH Nguyen, G Piccinno, DA Drew, ...
Nature medicine 27 (2), 321-332, 2021
7842021
Relating the metatranscriptome and metagenome of the human gut
EA Franzosa, XC Morgan, N Segata, L Waldron, J Reyes, AM Earl, ...
Proceedings of the National Academy of Sciences 111 (22), E2329-E2338, 2014
7162014
Assessment of colorectal cancer molecular features along bowel subsites challenges the conception of distinct dichotomy of proximal versus distal colorectum
M Yamauchi, T Morikawa, A Kuchiba, Y Imamura, ZR Qian, R Nishihara, ...
Gut 61 (6), 847-854, 2012
6732012
A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets
O Koren, D Knights, A Gonzalez, L Waldron, N Segata, R Knight, ...
PLoS computational biology 9 (1), e1002863, 2013
6142013
Machine learning meta-analysis of large metagenomic datasets: tools and biological insights
E Pasolli, DT Truong, F Malik, L Waldron, N Segata
PLoS computational biology 12 (7), e1004977, 2016
5972016
Comprehensive MicroRNA profiling for head and neck squamous cell carcinomas
ABY Hui, M Lenarduzzi, T Krushel, L Waldron, M Pintilie, W Shi, ...
Clinical cancer research 16 (4), 1129-1139, 2010
4962010
Accessible, curated metagenomic data through ExperimentHub
E Pasolli, L Schiffer, P Manghi, A Renson, V Obenchain, DT Truong, ...
Nature methods 14 (11), 1023-1024, 2017
4432017
Transparency and reproducibility in artificial intelligence
B Haibe-Kains, GA Adam, A Hosny, F Khodakarami, ...
Nature 586 (7829), E14-E16, 2020
4292020
Racial/ethnic disparities in genomic sequencing
DE Spratt, T Chan, L Waldron, C Speers, FY Feng, OO Ogunwobi, ...
JAMA oncology 2 (8), 1070-1074, 2016
3402016
mRNA transcript quantification in archival samples using multiplexed, color-coded probes
PP Reis, L Waldron, RS Goswami, W Xu, Y Xuan, B Perez-Ordonez, ...
BMC biotechnology 11, 1-10, 2011
3182011
bioBakery: a meta’omic analysis environment
LJ McIver, G Abu-Ali, EA Franzosa, R Schwager, XC Morgan, L Waldron, ...
Bioinformatics 34 (7), 1235-1237, 2018
3172018
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