Timothy G Vaughan

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Alexei J. DrummondProfessor of Computational Biology, University of AucklandVerificeret mail på cs.auckland.ac.nz
Tanja StadlerETH ZurichVerificeret mail på env.ethz.ch
Denise KühnertRobert Koch Institut & Max Planck Institute of GeoanthropologyVerificeret mail på shh.mpg.de
Joëlle Barido-SottaniIBENS, CNRS, ENS PSLVerificeret mail på bio.ens.psl.eu
Joseph HeledAuckland UniversityVerificeret mail på cs.auckland.ac.nz
Remco BouckaertVerificeret mail på cs.auckland.ac.nz
David A RasmussenNorth Carolina State UniversityVerificeret mail på ncsu.edu
Andrew RambautProfessor of Molecular Evolution, University of EdinburghVerificeret mail på ed.ac.uk
Dong XieDepartment of Computer Science, University of AucklandVerificeret mail på cs.auckland.ac.nz
Marc A. SuchardProfessor, University of California, Los AngelesVerificeret mail på ucla.edu
Chieh-Hsi WuLecturer in Statistics, University of SouthamptonVerificeret mail på soton.ac.uk
Sebastian DucheneInstitut Pasteur, Paris, FranceVerificeret mail på pasteur.fr
Nicola Felix MüllerUniviersity of California San FranciscoVerificeret mail på ucsf.edu
Louis du PlessisUniversity of OxfordVerificeret mail på zoo.ox.ac.uk
Peter D. DrummondProfessor of Theoretical Physics, Swinburne University of TechnologyVerificeret mail på swin.edu.au
Huw Alexander OgilvieMD Anderson Cancer CenterVerificeret mail på mdanderson.org
Chi ZhangInstitute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of SciencesVerificeret mail på ivpp.ac.cn
Fábio Kuriki MendesAssistant Professor, Louisiana State UniversityVerificeret mail på lsu.edu
Alexandra "Sasha" GavryushkinaResearch fellow at Canterbury UniversityVerificeret mail på canterbury.ac.nz
Sarah NadeauPhD Student, ETH ZurichVerificeret mail på bsse.ethz.ch

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Timothy G Vaughan

Department of Biosystems Science and Engineering, ETH Zürich, Switzerland

Verificeret mail på bsse.ethz.ch

Phylogenetics Phylodynamics Bayesian Statistics Computational Biology


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
BEAST 2: a software platform for Bayesian evolutionary analysis R Bouckaert, J Heled, D Kühnert, T Vaughan, CH Wu, D Xie, MA Suchard, ... PLoS computational biology 10 (4), e1003537, 2014	6600	2014
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019	3347	2019
Spread of a SARS-CoV-2 variant through Europe in the summer of 2020 EB Hodcroft, M Zuber, S Nadeau, TG Vaughan, KHD Crawford, ... Nature 595 (7869), 707-712, 2021	616	2021
Genomic sequencing of SARS-CoV-2: a guide to implementation for maximum impact on public health, 8 January 2021 World Health Organization World Health Organization, 2021	164	2021
Phylodynamics with migration: a computational framework to quantify population structure from genomic data D Kühnert, T Stadler, TG Vaughan, AJ Drummond Molecular biology and evolution 33 (8), 2102-2116, 2016	164	2016
Efficient Bayesian inference under the structured coalescent TG Vaughan, D Kühnert, A Popinga, D Welch, AJ Drummond Bioinformatics 30 (16), 2272-2279, 2014	151	2014
Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth–death SIR model D Kühnert, T Stadler, TG Vaughan, AJ Drummond Journal of the Royal Society Interface 11 (94), 20131106, 2014	141	2014
IcyTree: rapid browser-based visualization for phylogenetic trees and networks TG Vaughan Bioinformatics 33 (15), 2392-2394, 2017	122	2017
Taming the BEAST—A community teaching material resource for BEAST 2 J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ... Systematic biology 67 (1), 170-174, 2018	118	2018
A Bayesian model predicts the response of axons to molecular gradients D Mortimer, J Feldner, T Vaughan, I Vetter, Z Pujic, WJ Rosoff, K Burrage, ... Proceedings of the National Academy of Sciences 106 (25), 10296-10301, 2009	117	2009
The origin and early spread of SARS-CoV-2 in Europe SA Nadeau, TG Vaughan, J Scire, JS Huisman, T Stadler Proceedings of the National Academy of Sciences 118 (9), e2012008118, 2021	110	2021
Einstein-Podolsky-Rosen entanglement strategies in two-well Bose-Einstein condensates QY He, MD Reid, TG Vaughan, C Gross, M Oberthaler, PD Drummond Physical review letters 106 (12), 120405, 2011	106	2011
Axon guidance by growth-rate modulation D Mortimer, Z Pujic, T Vaughan, AW Thompson, J Feldner, I Vetter, ... Proceedings of the National Academy of Sciences 107 (11), 5202-5207, 2010	82	2010
Reproductive number of the COVID-19 epidemic in Switzerland with a focus on the Cantons of Basel-Stadt and Basel-Landschaft J Scire, SA Nadeau, TG Vaughan, B Gavin, S Fuchs, J Sommer, KN Koch, ... Swiss medical weekly 150 (19-20), w20271, 2020	79	2020
A stochastic simulator of birth–death master equations with application to phylodynamics TG Vaughan, AJ Drummond Molecular biology and evolution 30 (6), 1480-1493, 2013	75	2013
A multitype birth–death model for Bayesian inference of lineage-specific birth and death rates J Barido-Sottani, TG Vaughan, T Stadler Systematic biology 69 (5), 973-986, 2020	63	2020
Estimating epidemic incidence and prevalence from genomic data TG Vaughan, GE Leventhal, DA Rasmussen, AJ Drummond, D Welch, ... Molecular Biology and Evolution, msz106, 2019	55	2019
Inferring ancestral recombination graphs from bacterial genomic data TG Vaughan, D Welch, AJ Drummond, PJ Biggs, T George, NP French Genetics 205 (2), 857-870, 2017	53	2017
Genetic diversity loss in a biodiversity hotspot: ancient DNA quantifies genetic decline and former connectivity in a critically endangered marsupial C Pacioni, H Hunt, ME Allentoft, TG Vaughan, AF Wayne, A Baynes, ... Molecular Ecology 24 (23), 5813-5828, 2015	52	2015
Bayesian inference of reassortment networks reveals fitness benefits of reassortment in human influenza viruses NF Müller, U Stolz, G Dudas, T Stadler, TG Vaughan Proceedings of the National Academy of Sciences 117 (29), 17104-17111, 2020	51	2020

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