| Tracking changes in SARS-CoV-2 spike: evidence that D614G increases infectivity of the COVID-19 virus B Korber, WM Fischer, S Gnanakaran, H Yoon, J Theiler, W Abfalterer, ... Cell 182 (4), 812-827. e19, 2020 | 4442 | 2020 |
| Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection BF Keele, EE Giorgi, JF Salazar-Gonzalez, JM Decker, KT Pham, ... Proceedings of the National Academy of Sciences 105 (21), 7552-7557, 2008 | 2361 | 2008 |
| Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection JF Salazar-Gonzalez, MG Salazar, BF Keele, GH Learn, EE Giorgi, H Li, ... Journal of Experimental Medicine 206 (6), 1273-1289, 2009 | 987 | 2009 |
| The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection N Goonetilleke, MKP Liu, JF Salazar-Gonzalez, G Ferrari, E Giorgi, ... Journal of experimental medicine 206 (6), 1253-1272, 2009 | 839 | 2009 |
| Emergence of SARS-CoV-2 through recombination and strong purifying selection X Li, EE Giorgi, MH Marichannegowda, B Foley, C Xiao, XP Kong, Y Chen, ... Science advances 6 (27), eabb9153, 2020 | 573 | 2020 |
| Phenotypic properties of transmitted founder HIV-1 NF Parrish, F Gao, H Li, EE Giorgi, HJ Barbian, EH Parrish, L Zajic, ... Proceedings of the National Academy of Sciences 110 (17), 6626-6633, 2013 | 505 | 2013 |
| Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants MR Abrahams, JA Anderson, EE Giorgi, C Seoighe, K Mlisana, LH Ping, ... Journal of virology 83 (8), 3556-3567, 2009 | 505 | 2009 |
| Spike mutation pipeline reveals the emergence of a more transmissible form of SARS-CoV-2 B Korber, WM Fischer, S Gnanakaran, H Yoon, J Theiler, W Abfalterer, ... BioRxiv, 2020 | 498 | 2020 |
| Protective efficacy of a global HIV-1 mosaic vaccine against heterologous SHIV challenges in rhesus monkeys DH Barouch, KE Stephenson, EN Borducchi, K Smith, K Stanley, ... Cell 155 (3), 531-539, 2013 | 374 | 2013 |
| Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing W Fischer, VV Ganusov, EE Giorgi, PT Hraber, BF Keele, T Leitner, ... PloS one 5 (8), e12303, 2010 | 351 | 2010 |
| High multiplicity infection by HIV-1 in men who have sex with men H Li, KJ Bar, S Wang, JM Decker, Y Chen, C Sun, JF Salazar-Gonzalez, ... PLoS pathogens 6 (5), e1000890, 2010 | 349 | 2010 |
| Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or SIVmac251 recapitulates human mucosal infection by HIV-1 BF Keele, H Li, GH Learn, P Hraber, EE Giorgi, T Grayson, C Sun, Y Chen, ... Journal of Experimental Medicine 206 (5), 1117-1134, 2009 | 330 | 2009 |
| Sheffield COVID-19 Genomics Group B Korber, WM Fischer, S Gnanakaran, H Yoon, J Theiler, W Abfalterer, ... Tracking changes in SARS-CoV-2 spike: evidence that D614G increases …, 2020 | 271 | 2020 |
| Modeling sequence evolution in acute HIV-1 infection HY Lee, EE Giorgi, BF Keele, B Gaschen, GS Athreya, ... Journal of theoretical biology 261 (2), 341-360, 2009 | 229 | 2009 |
| HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC N Wood, T Bhattacharya, BF Keele, E Giorgi, M Liu, B Gaschen, ... PLoS pathogens 5 (5), e1000414, 2009 | 219 | 2009 |
| Systematic analysis of monoclonal antibodies against Ebola virus GP defines features that contribute to protection EO Saphire, SL Schendel, ML Fusco, K Gangavarapu, BM Gunn, AZ Wec, ... Cell 174 (4), 938-952. e13, 2018 | 200 | 2018 |
| Human non-neutralizing HIV-1 envelope monoclonal antibodies limit the number of founder viruses during SHIV mucosal infection in rhesus macaques S Santra, GD Tomaras, R Warrier, NI Nicely, HX Liao, J Pollara, P Liu, ... PLoS pathogens 11 (8), e1005042, 2015 | 165 | 2015 |
| HIV-1 neutralizing antibody signatures and application to epitope-targeted vaccine design CA Bricault, K Yusim, MS Seaman, H Yoon, J Theiler, EE Giorgi, K Wagh, ... Cell host & microbe 25 (1), 59-72. e8, 2019 | 157 | 2019 |
| Role of donor genital tract HIV-1 diversity in the transmission bottleneck DI Boeras, PT Hraber, M Hurlston, T Evans-Strickfaden, T Bhattacharya, ... Proceedings of the National Academy of Sciences 108 (46), E1156-E1163, 2011 | 148 | 2011 |
| Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection H Song, EE Giorgi, VV Ganusov, F Cai, G Athreya, H Yoon, O Carja, ... Nature communications 9 (1), 1928, 2018 | 116 | 2018 |
Tanmoy BhattacharyaLos Alamos National Laboratory, Santa Fe InstituteVerificeret mail på santafe.edu