| ResFinder 4.0 for predictions of phenotypes from genotypes V Bortolaia, RS Kaas, E Ruppe, MC Roberts, S Schwarz, V Cattoir, ... Journal of Antimicrobial Chemotherapy 75 (12), 3491-3500, 2020 | 2149 | 2020 |
| Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli KG Joensen, F Scheutz, O Lund, H Hasman, RS Kaas, EM Nielsen, ... Journal of clinical microbiology 52 (5), 1501-1510, 2014 | 1364 | 2014 |
| Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ... Nature biotechnology 32 (8), 822-828, 2014 | 1145 | 2014 |
| Solving the problem of comparing whole bacterial genomes across different sequencing platforms RS Kaas, P Leekitcharoenphon, FM Aarestrup, O Lund PloS one 9 (8), e104984, 2014 | 816 | 2014 |
| Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ... Nature communications 10 (1), 1124, 2019 | 806 | 2019 |
| Detection of mcr-1 encoding plasmid-mediated colistin-resistant Escherichia coli isolates from human bloodstream infection and imported chicken meat, Denmark 2015 H Hasman, AM Hammerum, F Hansen, RS Hendriksen, B Olesen, ... Eurosurveillance 20 (49), 30085, 2015 | 466 | 2015 |
| Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing E Zankari, H Hasman, RS Kaas, AM Seyfarth, Y Agersø, O Lund, ... Journal of antimicrobial chemotherapy 68 (4), 771-777, 2013 | 390 | 2013 |
| ResFinder–an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes AF Florensa, RS Kaas, PTLC Clausen, D Aytan-Aktug, FM Aarestrup Microbial Genomics 8 (1), 000748, 2022 | 367 | 2022 |
| Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak RS Hendriksen, LB Price, JM Schupp, JD Gillece, RS Kaas, ... MBio 2 (4), 10.1128/mbio. 00157-11, 2011 | 351 | 2011 |
| Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica P Leekitcharoenphon, EM Nielsen, RS Kaas, O Lund, FM Aarestrup PloS one 9 (2), e87991, 2014 | 281 | 2014 |
| Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes RS Kaas, C Friis, DW Ussery, FM Aarestrup BMC genomics 13, 1-13, 2012 | 276 | 2012 |
| Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems? L Roer, RS Hendriksen, P Leekitcharoenphon, O Lukjancenko, RS Kaas, ... Msystems 1 (3), 10.1128/msystems. 00009-16, 2016 | 104 | 2016 |
| snpTree-a web-server to identify and construct SNP trees from whole genome sequence data P Leekitcharoenphon, RS Kaas, MCF Thomsen, C Friis, S Rasmussen, ... BMC genomics 13, 1-8, 2012 | 102 | 2012 |
| Genomic signature of multidrug-resistant Salmonella enterica serovar Typhi isolates related to a massive outbreak in Zambia between 2010 and 2012 RS Hendriksen, P Leekitcharoenphon, O Lukjancenko, ... Journal of clinical microbiology 53 (1), 262-272, 2015 | 101 | 2015 |
| Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand A Siriphap, P Leekitcharoenphon, RS Kaas, C Theethakaew, ... PLoS One 12 (1), e0169324, 2017 | 92 | 2017 |
| An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes C Henri, P Leekitcharoenphon, HA Carleton, N Radomski, RS Kaas, ... Frontiers in microbiology 8, 2351, 2017 | 70 | 2017 |
| Veillonella, Firmicutes: Microbes disguised as Gram negatives T Vesth, A Ozen, SC Andersen, RS Kaas, O Lukjancenko, J Bohlin, ... Standards in genomic sciences 9, 431-448, 2013 | 70 | 2013 |
| Global Sewage Surveillance project consortium RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ... Amid C, Cochrane G, Sicheritz-Ponten T, Schmitt H, Alvarez JRM, Aidara-Kane …, 2019 | 56 | 2019 |
| Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease KG Joensen, ALØ Engsbro, O Lukjancenko, RS Kaas, O Lund, H Westh, ... European Journal of Clinical Microbiology & Infectious Diseases 36, 1325-1338, 2017 | 47 | 2017 |
| European freshwater VHSV genotype Ia isolates divide into two distinct subpopulations S Kahns, HF Skall, RS Kaas, H Korsholm, BB Jensen, SP Jonstrup, ... Diseases of Aquatic Organisms 99 (1), 23-35, 2012 | 42 | 2012 |
Frank AarestrupTechnical University of Denmark, DTUVerificeret mail på food.dtu.dk