| Origins and evolution of microRNA genes in plant species M Nozawa, S Miura, M Nei Genome biology and evolution 4 (3), 230-239, 2012 | 283 | 2012 |
| The durability of immunity against reinfection by SARS-CoV-2: a comparative evolutionary study JP Townsend, HB Hassler, Z Wang, S Miura, J Singh, S Kumar, ... The Lancet Microbe 2 (12), e666-e675, 2021 | 190 | 2021 |
| Origins and Evolution of MicroRNA Genes in Drosophila Species M Nozawa, S Miura, M Nei Genome biology and evolution 2, 180-189, 2010 | 131 | 2010 |
| An evolutionary portrait of the progenitor SARS-CoV-2 and its dominant offshoots in COVID-19 pandemic S Kumar, Q Tao, S Weaver, M Sanderford, MA Caraballo-Ortiz, S Sharma, ... Molecular Biology and Evolution 38 (8), 3046-3059, 2021 | 82 | 2021 |
| Power and pitfalls of computational methods for inferring clone phylogenies and mutation orders from bulk sequencing data S Miura, T Vu, J Deng, T Buturla, O Oladeinde, J Choi, S Kumar Scientific Reports 10 (1), 3498, 2020 | 34 | 2020 |
| Predicting clone genotypes from tumor bulk sequencing of multiple samples S Miura, K Gomez, O Murillo, LA Huuki, T Vu, T Buturla, S Kumar Bioinformatics 34 (23), 4017-4026, 2018 | 33 | 2018 |
| Computational enhancement of single-cell sequences for inferring tumor evolution S Miura, LA Huuki, T Buturla, T Vu, K Gomez, S Kumar Bioinformatics 34 (17), i917-i926, 2018 | 30 | 2018 |
| Molecular evidence for SARS-CoV-2 in samples collected from patients with morbilliform eruptions since late 2019 in Lombardy, northern Italy A Amendola, M Canuti, S Bianchi, S Kumar, C Fappani, M Gori, D Colzani, ... Environmental Research 215, 113979, 2022 | 28 | 2022 |
| Somatic evolutionary timings of driver mutations K Gomez, S Miura, LA Huuki, BS Spell, JP Townsend, S Kumar BMC cancer 18, 1-10, 2018 | 28 | 2018 |
| A new method for inferring timetrees from temporally sampled molecular sequences S Miura, K Tamura, Q Tao, LA Huuki, SL Kosakovsky Pond, J Priest, ... PLoS Computational Biology 16 (1), e1007046, 2020 | 26 | 2020 |
| Evolutionary Changes of the Target Sites of Two MicroRNAs Encoded in the Hox Gene Cluster of Drosophila and Other Insect Species S Miura, M Nozawa, M Nei Genome Biology and Evolution 3, 129-139, 2011 | 22 | 2011 |
| PathFinder: Bayesian inference of clone migration histories in cancer S Kumar, A Chroni, K Tamura, M Sanderford, O Oladeinde, V Aly, T Vu, ... Bioinformatics 36 (Supplement_2), i675-i683, 2020 | 16 | 2020 |
| Delineation of tumor migration paths by using a bayesian biogeographic approach A Chroni, T Vu, S Miura, S Kumar Cancers 11 (12), 1880, 2019 | 12 | 2019 |
| Migrations of cancer cells through the lens of phylogenetic biogeography A Chroni, S Miura, O Oladeinde, V Aly, S Kumar Scientific Reports 11 (1), 17184, 2021 | 11 | 2021 |
| Random fluctuation of selection coefficients and the extent of nucleotide variation in human populations S Miura, Z Zhang, M Nei Proceedings of the National Academy of Sciences 110 (26), 10676-10681, 2013 | 10 | 2013 |
| TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity MA Caraballo-Ortiz, S Miura, M Sanderford, T Dolker, Q Tao, S Weaver, ... Bioinformatics 38 (10), 2719-2726, 2022 | 9 | 2022 |
| A phylogenetic approach to study the evolution of somatic mutational processes in cancer S Miura, T Vu, J Choi, JP Townsend, S Karim, S Kumar Communications Biology 5 (1), 617, 2022 | 7 | 2022 |
| Clone phylogenetics reveals metastatic tumor migrations, maps, and models A Chroni, S Miura, L Hamilton, T Vu, SG Gaffney, V Aly, S Karim, ... Cancers 14 (17), 4326, 2022 | 5 | 2022 |
| Using disease-associated coding sequence variation to investigate functional compensation by human paralogous proteins S Miura, S Tate, S Kumar Evolutionary Bioinformatics 11, EBO. S30594, 2015 | 2 | 2015 |
| Origins and evolution of microRNA genes in plants M Nozawa, S Miura, M Nei GENES & GENETIC SYSTEMS 85 (6), 398-398, 2010 | 2 | 2010 |