Sergei L Kosakovsky Pond

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Simon DW FrostMicrosoft PremonitionVerificeret mail på microsoft.com
Davey SmithProfessor of Medicine, University of California, San DiegoVerificeret mail på ucsd.edu
Joel WertheimUniversity of California San DiegoVerificeret mail på ucsd.edu
Konrad SchefflerIlluminaVerificeret mail på illumina.com
Ben MurrellDepartment of Microbiology, Tumor and Cell Biology, Karolinska InstitutetVerificeret mail på ki.se
Steven WeaverInstitute for Genomics and Evolutionary Medicine, Temple UniversityVerificeret mail på temple.edu
Susan LittleUniversity of California San DiegoVerificeret mail på health.ucsd.edu
Art FY PoonWestern UniversityVerificeret mail på uwo.ca
Spencer MuseProfessor of Statistics, North Carolina State UniversityVerificeret mail på ncsu.edu
Wayne DelportSimplify Genomics, IncVerificeret mail på simplifygenomics.com
Stephen D. ShankTemple UniversityVerificeret mail på temple.edu
Mike GravenorProfessor of Biostatistics and Epidemiology, Swansea UniversityVerificeret mail på swan.ac.uk
Darren MartinUniversity of Cape TownVerificeret mail på uct.ac.za
Anton NekrutenkoPenn State UniversityVerificeret mail på nekrut.org
Robert ShaferProfessor of Medicine, Stanford UniversityVerificeret mail på stanford.edu
Philippe LemeyFull Professor, KU LeuvenVerificeret mail på kuleuven.be
Martin D SmithSoftware Developer, Pacific Biosciences of CaliforniaVerificeret mail på pacificbiosciences.com
David L RobertsonProfessor, CVR Bioinformatics, MRC-University of Glasgow Centre for Virus ResearchVerificeret mail på glasgow.ac.uk
Stephanie J SpielmanChildhood Cancer Data Lab, Alex's Lemonade Stand FoundationVerificeret mail på ccdatalab.org
David PosadaProfessor of Genetics, CINBIO, University of Vigo, SpainVerificeret mail på uvigo.es

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Sergei L Kosakovsky Pond

Professor of Biology, Institute for Genomics and Evolutionary Medicine, Temple University

Verificeret mail på temple.edu - Startside

Viral evolution phylogenetics evolutionary modeling algorithms


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
HyPhy: hypothesis testing using phylogenies SLK Pond, SDW Frost, SV Muse Bioinformatics 21 (5), 676-679, 2005	3292	2005
Not so different after all: a comparison of methods for detecting amino acid sites under selection SL Kosakovsky Pond, SDW Frost Molecular biology and evolution 22 (5), 1208-1222, 2005	1909	2005
Detecting individual sites subject to episodic diversifying selection B Murrell, JO Wertheim, S Moola, T Weighill, K Scheffler, ... PLoS genetics 8 (7), e1002764, 2012	1670	2012
Genomics and epidemiology of the P. 1 SARS-CoV-2 lineage in Manaus, Brazil NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ... Science 372 (6544), 815-821, 2021	1653	2021
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ... Nature 603 (7902), 679-686, 2022	1574	2022
Detection of a SARS-CoV-2 variant of concern in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... Nature 592 (7854), 438-443, 2021	1573	2021
Datamonkey: rapid detection of selective pressure on individual sites of codon alignments SLK Pond, SDW Frost Bioinformatics 21 (10), 2531-2533, 2005	1506	2005
Not so different after all: a comparison of methods for detecting amino acid sites under selection SLK Pond, SD Frost Mol Biol Evol 22 (5), 1208-1222, 2005	1382	2005
Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology W Delport, AFY Poon, SDW Frost, SL Kosakovsky Pond Bioinformatics 26 (19), 2455-2457, 2010	1330	2010
FUBAR: a fast, unconstrained bayesian approximation for inferring selection B Murrell, S Moola, A Mabona, T Weighill, D Sheward, ... Molecular biology and evolution 30 (5), 1196-1205, 2013	1229	2013
Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... medrxiv, 2020.12. 21.20248640, 2020	1220	2020
The biological and clinical significance of emerging SARS-CoV-2 variants K Tao, PL Tzou, J Nouhin, RK Gupta, T de Oliveira, SL Kosakovsky Pond, ... Nature Reviews Genetics 22 (12), 757-773, 2021	1071	2021
Automated phylogenetic detection of recombination using a genetic algorithm SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost Molecular biology and evolution 23 (10), 1891-1901, 2006	1013	2006
GARD: a genetic algorithm for recombination detection SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost Bioinformatics 22 (24), 3096-3098, 2006	859	2006
Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes S Weaver, SD Shank, SJ Spielman, M Li, SV Muse, SL Kosakovsky Pond Molecular biology and evolution 35 (3), 773-777, 2018	798	2018
Persistent HIV-1 replication maintains the tissue reservoir during therapy R Lorenzo-Redondo, HR Fryer, T Bedford, EY Kim, J Archer, ... Nature 530 (7588), 51-56, 2016	705	2016
Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection MD Smith, JO Wertheim, S Weaver, B Murrell, K Scheffler, ... Molecular biology and evolution 32 (5), 1342-1353, 2015	691	2015
RELAX: detecting relaxed selection in a phylogenetic framework JO Wertheim, B Murrell, MD Smith, SL Kosakovsky Pond, K Scheffler Molecular biology and evolution 32 (3), 820-832, 2015	613	2015
Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ... Nature medicine 28 (9), 1785-1790, 2022	591	2022
Gene-wide identification of episodic selection B Murrell, S Weaver, MD Smith, JO Wertheim, S Murrell, A Aylward, ... Molecular biology and evolution 32 (5), 1365-1371, 2015	546	2015

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