| Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two … MCF Thomsen, M Nielsen Nucleic acids research 40 (W1), W281-W287, 2012 | 452 | 2012 |
| Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles L Roer, V Tchesnokova, R Allesøe, M Muradova, S Chattopadhyay, ... Journal of Clinical Microbiology 55 (8), 2538-2543, 2017 | 183 | 2017 |
| A bacterial analysis platform: an integrated system for analysing bacterial whole genome sequencing data for clinical diagnostics and surveillance MCF Thomsen, J Ahrenfeldt, JLB Cisneros, V Jurtz, MV Larsen, ... PloS one 11 (6), e0157718, 2016 | 181 | 2016 |
| MHCcluster, a method for functional clustering of MHC molecules M Thomsen, C Lundegaard, S Buus, O Lund, M Nielsen Immunogenetics 65, 655-665, 2013 | 151 | 2013 |
| snpTree-a web-server to identify and construct SNP trees from whole genome sequence data P Leekitcharoenphon, RS Kaas, MCF Thomsen, C Friis, S Rasmussen, ... BMC genomics 13, 1-8, 2012 | 102 | 2012 |
| WGS-based surveillance of third-generation cephalosporin-resistant Escherichia coli from bloodstream infections in Denmark L Roer, F Hansen, MCF Thomsen, JD Knudsen, DS Hansen, M Wang, ... Journal of Antimicrobial Chemotherapy 72 (7), 1922-1929, 2017 | 89 | 2017 |
| MGmapper: reference based mapping and taxonomy annotation of metagenomics sequence reads TN Petersen, O Lukjancenko, MCF Thomsen, M Maddalena Sperotto, ... PloS one 12 (5), e0176469, 2017 | 83 | 2017 |
| CHTyper, a Web Tool for Subtyping of Extraintestinal Pathogenic Escherichia coli Based on the fumC and fimH Alleles L Roer, TB Johannesen, F Hansen, M Stegger, V Tchesnokova, ... Journal of clinical microbiology 56 (4), 10.1128/jcm. 00063-18, 2018 | 58 | 2018 |
| RUCS: rapid identification of PCR primers for unique core sequences MCF Thomsen, H Hasman, H Westh, H Kaya, O Lund Bioinformatics 33 (24), 3917-3921, 2017 | 47 | 2017 |
| The COMPARE data hubs C Amid, N Pakseresht, N Silvester, S Jayathilaka, O Lund, LD Dynovski, ... Database 2019, baz136, 2019 | 37 | 2019 |
| PanFunPro: PAN-genome analysis based on FUNctional PROfiles O Lukjancenko, MC Thomsen, M Voldby Larsen, DW Ussery F1000Research 2, 265, 2013 | 31 | 2013 |
| Large scale automated phylogenomic analysis of bacterial isolates and the Evergreen Online platform J Szarvas, J Ahrenfeldt, JLB Cisneros, MCF Thomsen, FM Aarestrup, ... Communications biology 3 (1), 137, 2020 | 12 | 2020 |
| The CGE tool box MV Larsen, KG Joensen, E Zankari, J Ahrenfeldt, O Lukjancenko, ... Applied genomics of foodborne pathogens, 65-90, 2017 | 10 | 2017 |
Ole LundTechnical University of DenmarkVerificeret mail på dtu.dk
