| Amber 2023 DA Case, HM Aktulga, K Belfon, IY Ben-Shalom, JT Berryman, SR Brozell, ... University of California, San Francisco, 2023 | 6138 | 2023 |
| AMBER 14; University of California: San Francisco, 2014 DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ... There is no corresponding record for this reference, 1-826, 2014 | 465 | 2014 |
| Evaluation of acridine orange, LysoTracker Red, and quinacrine as fluorescent probes for long‐term tracking of acidic vesicles A Pierzyńska‐Mach, PA Janowski, JW Dobrucki Cytometry Part A 85 (8), 729-737, 2014 | 314 | 2014 |
| The FF14SB force field DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ... Amber 14, 29-31, 2014 | 258 | 2014 |
| AmberTools 16 DA Case, RM Betz, W Botello-Smith, DS Cerutti, TE Cheatham III, ... University of California, San Francisco, 2016 | 124 | 2016 |
| Rationale for the real‐time and dynamic cell death assays using propidium iodide H Zhao, J Oczos, P Janowski, D Trembecka, J Dobrucki, Z Darzynkiewicz, ... Cytometry Part A: The Journal of the International Society for Advancement …, 2010 | 78 | 2010 |
| AMBER 2016 RE Duke, TJ Giese, H Gohlke, AW Goetz, N Homeyer, S Izadi, P Janowski, ... University of California, San Francisco 1 (3), 2016 | 64 | 2016 |
| Molecular dynamics simulation of triclinic lysozyme in a crystal lattice PA Janowski, C Liu, J Deckman, DA Case Protein science 25 (1), 87-102, 2016 | 59 | 2016 |
| Peptide crystal simulations reveal hidden dynamics PA Janowski, DS Cerutti, J Holton, DA Case Journal of the American Chemical Society 135 (21), 7938-7948, 2013 | 53 | 2013 |
| AMBER 16. 2016 DA Case, R Betz, D Cerutti, TE Cheatham, T Darden, RE Duke, T Giese, ... San Francisco, 2016 | 50 | 2016 |
| Evidence for the role of active site residues in the hairpin ribozyme from molecular simulations along the reaction path H Heldenbrand, PA Janowski, G Giambaşu, TJ Giese, JE Wedekind, ... Journal of the American Chemical Society 136 (22), 7789-7792, 2014 | 41 | 2014 |
| Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix NW Moriarty, PA Janowski, JM Swails, H Nguyen, JS Richardson, ... Biological Crystallography 76 (1), 51-62, 2020 | 35 | 2020 |
| Improved ligand geometries in crystallographic refinement using AFITT in PHENIX PA Janowski, NW Moriarty, BP Kelley, DA Case, DM York, PD Adams, ... Biological Crystallography 72 (9), 1062-1072, 2016 | 31 | 2016 |
| The Walker L Cast, W Kun-Da, L Yuan-Ching, Y Vais | 31 | 18 |
| ParmEd J Swails, C Hernandez, DL Mobley, H Nguyen, LP Wang, P Janowski URL: https://github. com/ParmEd/ParmEd, 2010 | 26 | 2010 |
| All-atom crystal simulations of DNA and RNA duplexes C Liu, PA Janowski, DA Case Biochimica et Biophysica Acta (BBA)-General Subjects 1850 (5), 1059-1071, 2015 | 25 | 2015 |
| Amber 2016, Univ DA Case, RM Betz, DS Cerutti, ITE Cheatham, TA Darden, RE Duke, ... California, San Francisco, 2016 | 23 | 2016 |
| Amber 2016 D Cerutti, T Cheatham Iii, T Darden, R Duke, T Giese, H Gohlke, A Goetz, ... University of California, San Francisco, 2016 | 21 | 2016 |
| AmberTools 16 R Duke, T Giese, H Gohlke, A Goetz, N Homeyer, S Izadi, P Janowski, ... University of California, San Francisco, 2016 | 21 | 2016 |
| Amber RE Duke, T Giese, H Gohlke, A Goetz, N Homeyer, S Izadi, P Janowski, ... University of California: San Francisco, 2016 | 14 | 2016 |
David CeruttiRutgersE-mailová adresa ověřena na: rutgers.edu