| The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes GCP Van Zundert, J Rodrigues, M Trellet, C Schmitz, PL Kastritis, ... Journal of molecular biology 428 (4), 720-725, 2016 | 2741 | 2016 |
| The HADDOCK web server for data-driven biomolecular docking SJ De Vries, M Van Dijk, AMJJ Bonvin Nature protocols 5 (5), 883-897, 2010 | 1549 | 2010 |
| HADDOCK versus HADDOCK: new features and performance of HADDOCK2. 0 on the CAPRI targets SJ De Vries, ADJ Van Dijk, M Krzeminski, M van Dijk, A Thureau, V Hsu, ... Proteins: structure, function, and bioinformatics 69 (4), 726-733, 2007 | 680 | 2007 |
| 3D-DART: a DNA structure modelling server M van Dijk, AMJJ Bonvin Nucleic acids research 37 (suppl_2), W235-W239, 2009 | 382 | 2009 |
| Development of a European flood forecasting system ADPJ De Roo, B Gouweleeuw, J Thielen, J Bartholmes, ... International Journal of River Basin Management 1 (1), 49-59, 2003 | 291 | 2003 |
| Information-driven protein–DNA docking using HADDOCK: it is a matter of flexibility M van Dijk, ADJ van Dijk, V Hsu, R Boelens, AMJJ Bonvin Nucleic acids research 34 (11), 3317-3325, 2006 | 214 | 2006 |
| The hepatocyte growth factor/Met pathway controls proliferation and apoptosis in multiple myeloma PWB Derksen, DJJ De Gorter, HP Meijer, RJ Bende, M Van Dijk, ... Leukemia 17 (4), 764-774, 2003 | 214 | 2003 |
| WeNMR: structural biology on the grid TA Wassenaar, M Van Dijk, N Loureiro-Ferreira, G Van Der Schot, ... Journal of Grid Computing 10, 743-767, 2012 | 210 | 2012 |
| Mass spec studio for integrative structural biology M Rey, V Sarpe, KM Burns, J Buse, CAH Baker, M van Dijk, L Wordeman, ... Structure 22 (10), 1538-1548, 2014 | 114 | 2014 |
| A protein–DNA docking benchmark M van Dijk, AMJJ Bonvin Nucleic acids research 36 (14), e88-e88, 2008 | 94 | 2008 |
| A comparative linear interaction energy and MM/PBSA study on SIRT1–ligand binding free energy calculation EA Rifai, M van Dijk, NPE Vermeulen, A Yanuar, DP Geerke Journal of Chemical Information and Modeling 59 (9), 4018-4033, 2019 | 80 | 2019 |
| Defining the limits of homology modeling in information‐driven protein docking J Rodrigues, ASJ Melquiond, E Karaca, M Trellet, M Van Dijk, ... Proteins: Structure, Function, and Bioinformatics 81 (12), 2119-2128, 2013 | 78 | 2013 |
| Pushing the limits of what is achievable in protein–DNA docking: benchmarking HADDOCK’s performance M van Dijk, AMJJ Bonvin Nucleic acids research 38 (17), 5634-5647, 2010 | 65 | 2010 |
| Sense and simplicity in HADDOCK scoring: Lessons from CASP‐CAPRI round 1 A Vangone, J Rodrigues, LC Xue, GCP Van Zundert, C Geng, ... Proteins: Structure, Function, and Bioinformatics 85 (3), 417-423, 2017 | 63 | 2017 |
| Blind prediction of interfacial water positions in CAPRI MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ... Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014 | 63 | 2014 |
| Strengths and weaknesses of data‐driven docking in critical assessment of prediction of interactions SJ de Vries, ASJ Melquiond, PL Kastritis, E Karaca, A Bordogna, ... Proteins: Structure, Function, and Bioinformatics 78 (15), 3242-3249, 2010 | 55 | 2010 |
| Rapid prediction of multi-dimensional NMR data sets S Gradmann, C Ader, I Heinrich, D Nand, M Dittmann, A Cukkemane, ... Journal of biomolecular NMR 54, 377-387, 2012 | 41 | 2012 |
| A flexible, grid-enabled web portal for GROMACS molecular dynamics simulations M van Dijk, TA Wassenaar, AMJJ Bonvin Journal of Chemical theory and Computation 8 (10), 3463-3472, 2012 | 41 | 2012 |
| The structure of the XPF-ssDNA complex underscores the distinct roles of the XPF and ERCC1 helix-hairpin-helix domains in ss/ds DNA recognition D Das, GE Folkers, M van Dijk, NGJ Jaspers, JHJ Hoeijmakers, R Kaptein, ... Structure 20 (4), 667-675, 2012 | 38 | 2012 |
| Recent developments in linear interaction energy based binding free energy calculations EA Rifai, M Van Dijk, DP Geerke Frontiers in Molecular Biosciences 7, 114, 2020 | 33 | 2020 |
Alexandre M.J.J. BonvinUtrecht universityبريد إلكتروني تم التحقق منه على uu.nl
