متابعة
Paul J McMurdie
Paul J McMurdie
Principal Bioinformatics Scientist at D2G Oncology
بريد إلكتروني تم التحقق منه على d2g-oncology.com - الصفحة الرئيسية
عنوان
عدد مرات الاقتباسات
عدد مرات الاقتباسات
السنة
DADA2: High-resolution sample inference from Illumina amplicon data.‏
BJ Callahan, PJ McMurdie, MJ Rosen, AW Han, AJA Johnson, ...‏
Nature Methods, 2016‏
269662016
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data‏
PJ McMurdie, S Holmes‏
PloS one 8 (4), e61217, 2013‏
181312013
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis‏
BJ Callahan, PJ McMurdie, SP Holmes‏
The ISME journal 11 (12), 2639-2643, 2017‏
32272017
Waste not, want not: why rarefying microbiome data is inadmissible‏
PJ McMurdie, S Holmes‏
PLoS computational biology 10 (4), e1003531, 2014‏
30112014
Temporal and spatial variation of the human microbiota during pregnancy‏
DB DiGiulio, BJ Callahan, PJ McMurdie, EK Costello, DJ Lyell, ...‏
Proceedings of the National Academy of Sciences 112 (35), 11060-11065, 2015‏
12452015
Bioconductor workflow for microbiome data analysis: from raw reads to community analyses‏
BJ Callahan, K Sankaran, JA Fukuyama, PJ McMurdie, SP Holmes‏
F1000Research 5, 1492, 2016‏
10642016
Advancing our understanding of the human microbiome using QIIME‏
JA Navas-Molina, JM Peralta-Sánchez, A González, PJ McMurdie, ...‏
Methods in enzymology 531, 371-444, 2013‏
6692013
Phyloseq: a bioconductor package for handling and analysis of high-throughput phylogenetic sequence data‏
PJ McMURDIE, S Holmes‏
Biocomputing 2012, 235-246, 2012‏
3302012
Butyrate-producing human gut symbiont, Clostridium butyricum, and its role in health and disease‏
MK Stoeva, J Garcia-So, N Justice, J Myers, S Tyagi, M Nemchek, ...‏
Gut microbes 13 (1), 1907272, 2021‏
2912021
Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease‏
FJ Ryan, AM Ahern, RS Fitzgerald, EJ Laserna-Mendieta, EM Power, ...‏
Nature communications 11 (1), 1512, 2020‏
2642020
Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides‏
PJ McMurdie, SF Behrens, JA Müller, J Göke, KM Ritalahti, R Wagner, ...‏
PLoS Genetics 5 (11), e1000714, 2009‏
1962009
Leveraging sequence-based faecal microbial community survey data to identify a composite biomarker for colorectal cancer‏
MS Shah, TZ DeSantis, T Weinmaier, PJ McMurdie, JL Cope, A Altrichter, ...‏
Gut 67 (5), 882-891, 2018‏
1852018
Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking‏
PJ McMurdie, S Holmes‏
Bioinformatics 31 (2), 282-283, 2015‏
1732015
Monitoring Abundance and Expression of “Dehalococcoides” Species Chloroethene-Reductive Dehalogenases in a Tetrachloroethene-Dechlorinating Flow Column‏
S Behrens, MF Azizian, PJ McMurdie, A Sabalowsky, ME Dolan, ...‏
Applied and Environmental Microbiology 74 (18), 5695-5703, 2008‏
1702008
Holmes‏
PJ McMurdie‏
1652013
High-resolution sample inference from Illumina amplicon data., 2016, 13‏
BJ Callahan, PJ McMurdie, MJ Rosen, AW Han, AJA Johnson, SPH Dada‏
DOI: https://doi. org/10.1038/nmeth 3869, 581-583, 0‏
157
Improvements to postprandial glucose control in subjects with type 2 diabetes: a multicenter, double blind, randomized placebo-controlled trial of a novel probiotic formulation‏
F Perraudeau, P McMurdie, J Bullard, A Cheng, C Cutcliffe, A Deo, J Eid, ...‏
BMJ Open Diabetes Research and Care 8 (1), e001319, 2020‏
1372020
DADA2: High resolution sample inference from amplicon data‏
BJ Callahan, PJ McMurdie, MJ Rosen, AW Han, AJ Johnson, SP Holmes‏
BioRxiv, 024034, 2015‏
812015
Site-Specific Mobilization of Vinyl Chloride Respiration Islands by a Mechanism Common in Dehalococcoides‏
PJ McMurdie, LA Hug, EA Edwards, S Holmes, AM Spormann‏
BMC genomics 12, 1-15, 2011‏
762011
Hydrogen production in photosynthetic microbial mats in the Elkhorn Slough estuary, Monterey Bay‏
LC Burow, D Woebken, BM Bebout, PJ McMurdie, SW Singer, ...‏
The ISME journal 6 (4), 863-874, 2012‏
722012
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مقالات 1–20