متابعة
Dominik Gront
Dominik Gront
University of Warsaw, Faculty of Chemistry
بريد إلكتروني تم التحقق منه على chem.uw.edu.pl - الصفحة الرئيسية
عنوان
عدد مرات الاقتباسات
عدد مرات الاقتباسات
السنة
Coarse-grained protein models and their applications‏
S Kmiecik, D Gront, M Kolinski, L Wieteska, AE Dawid, A Kolinski‏
Chemical Reviews 116 (14), 7898-7936, 2016‏
11572016
Macromolecular modeling and design in Rosetta: recent methods and frameworks‏
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...‏
Nature methods 17 (7), 665-680, 2020‏
7542020
Generalized fragment picking in Rosetta: design, protocols and applications‏
D Gront, DW Kulp, RM Vernon, CEM Strauss, D Baker‏
PloS one 6 (8), e23294, 2011‏
2252011
Backbone building from quadrilaterals: a fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates‏
D Gront, S Kmiecik, A Kolinski‏
Journal of computational chemistry 28 (9), 1593-1597, 2007‏
1432007
Comparison of three Monte Carlo conformational search strategies for a proteinlike homopolymer model: Folding thermodynamics and identification of low-energy structures‏
D Gront, A Kolinski, J Skolnick‏
The Journal of Chemical Physics 113 (12), 5065-5071, 2000‏
922000
Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field‏
S Kmiecik, D Gront, A Kolinski‏
BMC structural biology 7 (1), 1-11, 2007‏
612007
Utility library for structural bioinformatics‏
D Gront, A Kolinski‏
Bioinformatics 24 (4), 584-585, 2008‏
602008
BioShell—a package of tools for structural biology computations‏
D Gront, A Kolinski‏
Bioinformatics 22 (5), 621-622, 2006‏
572006
Efficient scheme for optimization of parallel tempering Monte Carlo method‏
D Gront, A Kolinski‏
Journal of Physics: Condensed Matter 19 (3), 036225, 2007‏
472007
HCPM—program for hierarchical clustering of protein models‏
D Gront, A Kolinski‏
Bioinformatics 21 (14), 3179-3180, 2005‏
432005
Type II restriction endonuclease R. Eco29kI is a member of the GIY-YIG nuclease superfamily‏
EM Ibryashkina, MV Zakharova, VB Baskunov, ES Bogdanova, ...‏
BMC structural biology 7, 1-10, 2007‏
422007
A new combination of replica exchange Monte Carlo and histogram analysis for protein folding and thermodynamics‏
D Gront, A Kolinski, J Skolnick‏
The Journal of Chemical Physics 115 (3), 1569-1574, 2001‏
422001
Optimization of protein models‏
D Gront, S Kmiecik, M Blaszczyk, D Ekonomiuk, A Koliński‏
Wiley Interdisciplinary Reviews: Computational Molecular Science 2 (3), 479-493, 2012‏
412012
Better together: Elements of successful scientific software development in a distributed collaborative community‏
J Koehler Leman, BD Weitzner, PD Renfrew, SM Lewis, R Moretti, ...‏
PLoS computational biology 16 (5), e1007507, 2020‏
402020
From coarse-grained to atomic-level characterization of protein dynamics: transition state for the folding of B domain of protein A‏
S Kmiecik, D Gront, M Kouza, A Kolinski‏
The Journal of Physical Chemistry B 116 (23), 7026-7032, 2012‏
352012
Contrasting Health Effects of Bacteroidetes and Firmicutes Lies in Their Genomes: Analysis of P450s, Ferredoxins, and Secondary Metabolite Clusters‏
BVZ Nkosi, T Padayachee, D Gront, DR Nelson, K Syed‏
International journal of molecular sciences 23 (9), 5057, 2022‏
342022
Biofunctionalisation of p-doped silicon with cytochrome c 553 minimises charge recombination and enhances photovoltaic performance of the all-solid-state photosystem I-based …‏
JDJ Olmos, P Becquet, D Gront, J Sar, A Dąbrowski, G Gawlik, ...‏
RSC Advances 7 (75), 47854-47866, 2017‏
312017
Denatured proteins and early folding intermediates simulated in a reduced conformational space‏
S Kmiecik, M Kurcinski, A Rutkowska, D Gront, A Kolinski‏
Acta Biochimica Polonica 53 (1), 131-144, 2005‏
312005
Combining coarse-grained protein models with replica-exchange all-atom molecular dynamics‏
J Wabik, S Kmiecik, D Gront, M Kouza, A Koliński‏
International journal of molecular sciences 14 (5), 9893-9905, 2013‏
302013
More P450s Are Involved in Secondary Metabolite Biosynthesis in Streptomyces Compared to Bacillus, Cyanobacteria, and Mycobacterium‏
FC Mnguni, T Padayachee, W Chen, D Gront, JH Yu, DR Nelson, K Syed‏
International journal of molecular sciences 21 (13), 4814, 2020‏
282020
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مقالات 1–20