| Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters LJ Core, JJ Waterfall, JT Lis Science 322 (5909), 1845-1848, 2008 | 2354 | 2008 |
| Precise maps of RNA polymerase reveal how promoters direct initiation and pausing H Kwak, NJ Fuda, LJ Core, JT Lis Science 339 (6122), 950-953, 2013 | 873 | 2013 |
| Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers LJ Core, AL Martins, CG Danko, CT Waters, A Siepel, JT Lis Nature genetics 46 (12), 1311-1320, 2014 | 742 | 2014 |
| Breaking barriers to transcription elongation A Saunders, LJ Core, JT Lis Nature reviews Molecular cell biology 7 (8), 557-567, 2006 | 662 | 2006 |
| A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells N Hah, CG Danko, L Core, JJ Waterfall, A Siepel, JT Lis, WL Kraus Cell 145 (4), 622-634, 2011 | 566 | 2011 |
| Promoter-proximal pausing of RNA polymerase II: a nexus of gene regulation L Core, K Adelman Genes & development 33 (15-16), 960-982, 2019 | 528 | 2019 |
| Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq) DB Mahat, H Kwak, GT Booth, IH Jonkers, CG Danko, RK Patel, ... Nature protocols 11 (8), 1455-1476, 2016 | 505 | 2016 |
| Transcription regulation through promoter-proximal pausing of RNA polymerase II LJ Core, JT Lis Science 319 (5871), 1791-1792, 2008 | 452 | 2008 |
| Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription H Kilpinen, SM Waszak, AR Gschwind, SK Raghav, RM Witwicki, A Orioli, ... Science 342 (6159), 744-747, 2013 | 407 | 2013 |
| Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells CG Danko, N Hah, X Luo, AL Martins, L Core, JT Lis, A Siepel, WL Kraus Molecular cell 50 (2), 212-222, 2013 | 389 | 2013 |
| Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells IM Min, JJ Waterfall, LJ Core, RJ Munroe, J Schimenti, JT Lis Genes & development 25 (7), 742-754, 2011 | 351 | 2011 |
| Defining the status of RNA polymerase at promoters LJ Core, JJ Waterfall, DA Gilchrist, DC Fargo, H Kwak, K Adelman, JT Lis Cell reports 2 (4), 1025-1035, 2012 | 287 | 2012 |
| From telomere to telomere: The transcriptional and epigenetic state of human repeat elements SJ Hoyt, JM Storer, GA Hartley, PGS Grady, A Gershman, LG de Lima, ... Science 376 (6588), eabk3112, 2022 | 270 | 2022 |
| Identification of active transcriptional regulatory elements from GRO-seq data CG Danko, SL Hyland, LJ Core, AL Martins, CT Waters, HW Lee, ... Nature methods 12 (5), 433-438, 2015 | 225 | 2015 |
| X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila E Larschan, EP Bishop, PV Kharchenko, LJ Core, JT Lis, PJ Park, ... Nature 471 (7336), 115-118, 2011 | 220 | 2011 |
| Divergent transcription: a new feature of active promoters AC Seila, LJ Core, JT Lis, PA Sharp Cell cycle 8 (16), 2557-2564, 2009 | 218 | 2009 |
| Nuclear stability and transcriptional directionality separate functionally distinct RNA species R Andersson, P Refsing Andersen, E Valen, LJ Core, J Bornholdt, M Boyd, ... Nature communications 5 (1), 5336, 2014 | 198 | 2014 |
| Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation WS Kruesi, LJ Core, CT Waters, JT Lis, BJ Meyer elife 2, e00808, 2013 | 190 | 2013 |
| TPR‐mediated interaction of RapC with ComA inhibits response regulator‐DNA binding for competence development in Bacillus subtilis L Core, M Perego Molecular microbiology 49 (6), 1509-1522, 2003 | 171 | 2003 |
| Transcription factors GAF and HSF act at distinct regulatory steps to modulate stress-induced gene activation FM Duarte, NJ Fuda, DB Mahat, LJ Core, MJ Guertin, JT Lis Genes & development 30 (15), 1731-1746, 2016 | 148 | 2016 |