متابعة
Susan P Holmes
Susan P Holmes
Professor of Statistics, Stanford University
بريد إلكتروني تم التحقق منه على stat.stanford.edu - الصفحة الرئيسية
عنوان
عدد مرات الاقتباسات
عدد مرات الاقتباسات
السنة
DADA2: High-resolution sample inference from Illumina amplicon data‏
BJ Callahan, PJ McMurdie, MJ Rosen, AW Han, AJA Johnson, ...‏
Nature methods 13 (7), 581-583, 2016‏
269372016
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data‏
PJ McMurdie, S Holmes‏
PloS one 8 (4), e61217, 2013‏
181152013
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2‏
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...‏
Nature biotechnology 37 (8), 852-857, 2019‏
177892019
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis‏
BJ Callahan, PJ McMurdie, SP Holmes‏
The ISME Journal, 1-5, 2017‏
32282017
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible.‏
PJ McMurdie, S Holmes‏
PLOS Computational Biology 10 (4), 2014‏
30092014
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data‏
NM Davis, D Proctor, SP Holmes, DA Relman, BJ Callahan‏
biorxiv, 2018‏
26112018
Temporal and spatial variation of the human microbiota during pregnancy‏
DB DiGiulio, BJ Callahan, PJ McMurdie, EK Costello, DJ Lyell, ...‏
Proceedings of the National Academy of Sciences 112 (35), 11060-11065, 2015‏
12452015
Variability in the analysis of a single neuroimaging dataset by many teams‏
R Botvinik-Nezer, F Holzmeister, CF Camerer, A Dreber, J Huber, ...‏
Nature 582 (7810), 84-88, 2020‏
10872020
Bioconductor workflow for microbiome data analysis: from raw reads to community analyses‏
BJ Callahan, K Sankaran, JA Fukuyama, PJ McMurdie, SP Holmes‏
F1000Research 5, 1492, 2016‏
10632016
Bootstrap confidence levels for phylogenetic trees‏
B Efron, E Halloran, S Holmes‏
Proceedings of the National Academy of Sciences 93 (23), 13429-13429, 1996‏
10631996
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science‏
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...‏
PeerJ Preprints, 2018‏
10432018
Geometry of the space of phylogenetic trees‏
LJ Billera, SP Holmes, K Vogtmann‏
Advances in Applied Mathematics 27 (4), 733-767, 2001‏
8262001
Advancing our understanding of the human microbiome using QIIME‏
JA Navas-Molina, JM Peralta-Sánchez, A González, PJ McMurdie, ...‏
Methods in enzymology 531, 371-444, 2013‏
6692013
A back migration from Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y-chromosome haplotypes‏
F Cruciani, P Santolamazza, P Shen, V Macaulay, P Moral, A Olckers, ...‏
American journal of human genetics 70 (5), 1197, 2002‏
5002002
Colonic contribution to uremic solutes‏
PA Aronov, FJG Luo, NS Plummer, Z Quan, S Holmes, TH Hostetter, ...‏
Journal of the American Society of Nephrology 22 (9), 1769-1776, 2011‏
4612011
Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle‏
A Gorvitovskaia, SP Holmes, SM Huse‏
Microbiome 4 (15), DOI: 10.1186/s40168-016-0160-7, 2016‏
4532016
Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women‏
B Callahan, D DiGiulio, D Goltsman, C Sun, E Costello, P Jeganathan, ...‏
PNAS, 201705899, 2017‏
4082017
Nasal microenvironments and interspecific interactions influence nasal microbiota complexity and S. aureus carriage‏
M Yan, SJ Pamp, J Fukuyama, PH Hwang, DY Cho, S Holmes, ...‏
Cell host & microbe 14 (6), 631-640, 2013‏
3942013
Analysis of a nonreversible Markov chain sampler‏
P Diaconis, S Holmes, RM Neal‏
Annals of Applied Probability, 726-752, 2000‏
3772000
The molecular architecture of the eukaryotic chaperonin TRiC/CCT‏
A Leitner, LA Joachimiak, A Bracher, L Mönkemeyer, T Walzthoeni, ...‏
Structure 20 (5), 814-825, 2012‏
3372012
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مقالات 1–20