| Genomics and epidemiology of the P. 1 SARS-CoV-2 lineage in Manaus, Brazil NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ... Science 372 (6544), 815-821, 2021 | 1716 | 2021 |
| Test sensitivity is secondary to frequency and turnaround time for COVID-19 screening DB Larremore, B Wilder, E Lester, S Shehata, JM Burke, JA Hay, ... Science advances 7 (1), eabd5393, 2021 | 1105* | 2021 |
| Practical considerations for measuring the effective reproductive number, Rt KM Gostic, L McGough, EB Baskerville, S Abbott, K Joshi, C Tedijanto, ... PLoS computational biology 16 (12), e1008409, 2020 | 557 | 2020 |
| Estimating epidemiologic dynamics from cross-sectional viral load distributions JA Hay, L Kennedy-Shaffer, S Kanjilal, NJ Lennon, SB Gabriel, M Lipsitch, ... Science 373 (6552), eabh0635, 2021 | 228* | 2021 |
| Quantifying the impact of immune history and variant on SARS-CoV-2 viral kinetics and infection rebound: A retrospective cohort study JA Hay, SM Kissler, JR Fauver, C Mack, CG Tai, RM Samant, S Connolly, ... Elife 11, e81849, 2022 | 203* | 2022 |
| Seroepidemiologic study designs for determining SARS-COV-2 transmission and immunity H Clapham, J Hay, I Routledge, S Takahashi, M Choisy, D Cummings, ... Emerging Infectious Diseases 26 (9), 1978, 2020 | 90 | 2020 |
| Using viral load and epidemic dynamics to optimize pooled testing in resource-constrained settings B Cleary, JA Hay, B Blumenstiel, M Harden, M Cipicchio, J Bezney, ... Science translational medicine 13 (589), eabf1568, 2021 | 78* | 2021 |
| Estimation of transmission of COVID-19 in simulated nursing homes with frequent testing and immunity-based staffing I Holmdahl, R Kahn, JA Hay, CO Buckee, MJ Mina JAMA Network Open 4 (5), e2110071-e2110071, 2021 | 70* | 2021 |
| Estimating internationally imported cases during the early COVID-19 pandemic TF Menkir, T Chin, JA Hay, ED Surface, PM De Salazar, CO Buckee, ... Nature communications 12 (1), 311, 2021 | 57* | 2021 |
| An open source tool to infer epidemiological and immunological dynamics from serological data: serosolver JA Hay, A Minter, KEC Ainslie, J Lessler, B Yang, DAT Cummings, ... PLoS computational biology 16 (5), e1007840, 2020 | 23 | 2020 |
| Potential inconsistencies in Zika surveillance data and our understanding of risk during pregnancy JA Hay, P Nouvellet, CA Donnelly, S Riley PLOS Neglected Tropical Diseases 12 (12), e0006991, 2018 | 22 | 2018 |
| Report 39: Characterising COVID-19 epidemic dynamics and mortality under-ascertainment in Khartoum, Sudan O Watson, N Abdelmagid, A Ahmed, A Ahmed Abd Elhameed, ... School of Public Health, Imperial College London COVID-19: Imperial College …, 2020 | 20 | 2020 |
| Life course exposures continually shape antibody profiles and risk of seroconversion to influenza B Yang, J Lessler, H Zhu, CQ Jiang, JM Read, JA Hay, KO Kwok, R Shen, ... PLoS Pathogens 16 (7), e1008635, 2020 | 19 | 2020 |
| Characterising antibody kinetics from multiple influenza infection and vaccination events in ferrets JA Hay, K Laurie, M White, S Riley PLoS Computational Biology 15 (8), e1007294, 2019 | 18 | 2019 |
| Viral kinetics of sequential SARS-CoV-2 infections SM Kissler, JA Hay, JR Fauver, C Mack, CG Tai, DJ Anderson, DD Ho, ... Nature communications 14 (1), 6206, 2023 | 16 | 2023 |
| Near real-time surveillance of the SARS-CoV-2 epidemic with incomplete data PM De Salazar, F Lu, JA Hay, D Gomez-Barroso, P Fernández-Navarro, ... PLoS computational biology 18 (3), e1009964, 2022 | 11 | 2022 |
| Implications of the age profile of the novel coronavirus JA Hay, DJ Haw, W Hanage, CJE Metcalf, M Mina | 10 | 2020 |
| Viral loads observed under competing strain dynamics JA Hay, L Kennedy-Shaffer, MJ Mina MedRxiv, 2021.07. 27.21261224, 2021 | 8 | 2021 |
| Serodynamics: a primer and synthetic review of methods for epidemiological inference using serological data JA Hay, I Routledge, S Takahashi Epidemics, 100806, 2024 | 7* | 2024 |
| serosim: An R package for simulating serological data arising from vaccination, epidemiological and antibody kinetics processes A Menezes, S Takahashi, I Routledge, CJE Metcalf, AL Graham, JA Hay PLoS computational biology 19 (8), e1011384, 2023 | 7 | 2023 |