متابعة
Zeynep Kurkcuoglu
Zeynep Kurkcuoglu
PhD Bogazici University, PostDoc Utrecht University
بريد إلكتروني تم التحقق منه على boun.edu.tr - الصفحة الرئيسية
عنوان
عدد مرات الاقتباسات
عدد مرات الاقتباسات
السنة
Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2‏
Z Kurkcuoglu, PI Koukos, N Citro, ME Trellet, J Rodrigues, IS Moreira, ...‏
Journal of computer-aided molecular design 32, 175-185, 2018‏
1322018
INDIGO-DataCloud: A platform to facilitate seamless access to e-infrastructures‏
D Salomoni, I Campos, L Gaido, JM de Lucas, P Solagna, J Gomes, ...‏
Journal of Grid Computing 16, 381-408, 2018‏
722018
Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1‏
A Vangone, JPGLM Rodrigues, LC Xue, GCP van Zundert, C Geng, ...‏
Proteins: Structure, Function, and Bioinformatics, 2016‏
632016
The DisVis and PowerFit Web Servers: Explorative and Integrative Modeling of Biomolecular Complexes‏
GCP van Zundert, M Trellet, J Schaarschmidt, Z Kurkcuoglu, M David, ...‏
Journal of Molecular Biology 429 (3), 399–407, 2017‏
612017
ClustENM: ENM-based sampling of essential conformational space at full atomic resolution‏
Z Kurkcuoglu, I Bahar, P Doruker‏
Journal of chemical theory and computation 12 (9), 4549-4562, 2016‏
582016
Coupling between Catalytic Loop Motions and Enzyme Global Dynamics‏
Z Kurkcuoglu, A Bakan, D Kocaman, I Bahar, P Doruker‏
PLOS Computational Biology 8 (9), e1002705, 2012‏
582012
Collective dynamics of the ribosomal tunnel revealed by elastic network modeling‏
O Kurkcuoglu, Z Kurkcuoglu, P Doruker, RL Jernigan‏
Proteins: Structure, Function, and Bioinformatics 75 (4), 837-845, 2009‏
522009
Pre‐and post‐docking sampling of conformational changes using ClustENM and HADDOCK for protein‐protein and protein‐DNA systems‏
Z Kurkcuoglu, AMJJ Bonvin‏
Proteins: Structure, Function, and Bioinformatics 88 (2), 292-306, 2020‏
372020
How an inhibitor bound to subunit interface alters triosephosphate isomerase dynamics‏
Z Kurkcuoglu, D Findik, ED Akten, P Doruker‏
Biophysical Journal 109 (6), 1169-1178, 2015‏
292015
Ligand docking to intermediate and close-to-bound conformers generated by an elastic network model based algorithm for highly flexible proteins‏
Z Kurkcuoglu, P Doruker‏
PloS one 11 (6), e0158063, 2016‏
282016
Understanding the binding specificity of G-protein coupled receptors toward G-proteins and arrestins: application to the dopamine receptor family‏
AJ Preto, CAV Barreto, SJ Baptista, JG Almeida, A Lemos, A Melo, ...‏
Journal of Chemical Information and Modeling 60 (8), 3969-3984, 2020‏
172020
An overview of data‐driven HADDOCK strategies in CAPRI rounds 38‐45‏
PI Koukos, J Roel‐Touris, F Ambrosetti, C Geng, J Schaarschmidt, ...‏
Proteins: Structure, Function, and Bioinformatics 88 (8), 1029-1036, 2020‏
162020
Blind Dockings of Benzothiazoles to Multiple Receptor Conformations of Triosephosphate Isomerase from Trypanosoma cruzi and Human‏
Z Kurkcuoglu, G Ural, E Demet Akten, P Doruker‏
Molecular Informatics 30 (11‐12), 986-995, 2011‏
142011
Conformational dynamics of bacterial trigger factor in apo and ribosome-bound states‏
MT Can, Z Kurkcuoglu, G Ezeroglu, A Uyar, O Kurkcuoglu, P Doruker‏
PLoS One 12 (4), e0176262, 2017‏
82017
Sense and simplicity in HADDOCK scoring: lessons from CASP‐CAPRI (page 418)‏
A Vangone, J Rodrigues, LC Xue, GCP van Zundert, C Geng, ...‏
Proteins: Structure, Function, and Bioinformatics 85 (8), 1589-1590, 2017‏
52017
Substrate Effect on Catalytic Loop and Global Dynamics of Triosephosphate Isomerase‏
Z Kurkcuoglu, P Doruker‏
Entropy 15 (3), 1085-1099, 2013‏
42013
Functional Dynamics of Proteins Elucidated by Statistical Analysis of Simulation Data‏
B Alakent, Z Kurkcuoglu, P Doruker‏
Current Physical Chemistry 2 (4), 443-451, 2012‏
12012
Real‐World Evidence BRIDGE: A Tool to Connect Protocol With Code Programming‏
AC Royo, R Elbers JHJ, D Weibel, V Hoxhaj, Z Kurkcuoglu, ...‏
Pharmacoepidemiology and Drug Safety 33 (12), e70062, 2024‏
2024
Real-World Evidence BRIDGE: a tool to connect protocol with code programming‏
R Elbers, D Weibel, V Hoxhaj, Z Kurkcuoglu, M Sturkenboom, TA Vaz‏
2024
Real-World Evidence BRIDGE: a tool to connect protocol with code programming‏
A Cid Royo, R Elbers, D Weibel, V Hoxhaj, Z Kurkcuoglu, M Sturkenboom, ...‏
medRxiv, 2024.05. 08.24306833, 2024‏
2024
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مقالات 1–20